View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11670_low_6 (Length: 227)

Name: NF11670_low_6
Description: NF11670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11670_low_6
NF11670_low_6
[»] chr4 (4 HSPs)
chr4 (2-150)||(44574172-44574318)
chr4 (146-212)||(44574342-44574408)
chr4 (84-151)||(48795730-48795797)
chr4 (146-212)||(48795640-48795707)
[»] chr7 (2 HSPs)
chr7 (1-150)||(22489990-22490137)
chr7 (146-205)||(22490161-22490221)
[»] chr5 (2 HSPs)
chr5 (1-150)||(25383268-25383415)
chr5 (146-212)||(25383177-25383244)
[»] chr6 (1 HSPs)
chr6 (161-212)||(10123184-10123235)
[»] chr1 (1 HSPs)
chr1 (161-212)||(28244940-28244991)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 2 - 150
Target Start/End: Original strand, 44574172 - 44574318
Alignment:
Q  2 aattacagtgtgcatatatataatgatgacttaataataactggcagcgtaaaaaatgagattgaatattttaagagattgatgaagtctgagtttgaaa 101  Q
    ||||| ||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44574172 aattatagtgtgcatatgtatg--gatgacttaataataactggcagcgtaaaaaatgagattgaatattttaagagattgatgaagtctgagtttgaaa 44574269  T
Q  102 tactaatatagaagaattgtcacactttcttggaaggaaacttgtgaaa 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44574270 tactaatatagaagaattgtcacactttcttggaaggaaacttgtgaaa 44574318  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 44574342 - 44574408
Alignment:
Q  146 tgaaagaaattatgttatgaggtgctaaaaatgttcaatatgatgaagtgtaatgttacagagacat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44574342 tgaaagaaattatgttatgaggtgctaaaaatgttcaatatgatgaagtgtaatgttacagagacat 44574408  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 48795797 - 48795730
Alignment:
Q  84 tgaagtctgagtttgaaatactaatatagaagaattgtcacactttcttggaaggaaacttgtgaaag 151  Q
    ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||    
T  48795797 tgaagtctgagtttgaaatgctaatatagaataattgtcatactttcttggaaggaaacttgtgaaag 48795730  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 48795707 - 48795640
Alignment:
Q  146 tgaaagaaattatgtta-tgaggtgctaaaaatgttcaatatgatgaagtgtaatgttacagagacat 212  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48795707 tgaaagaaattatgtaaatgaggtgctaaaaatgttcaatatgatgaagtgtaatgttacaaagacat 48795640  T

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Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 22489990 - 22490137
Alignment:
Q  1 caattacagtgtgcatatatataatgatgacttaataataactggcagcgtaaaaaatgagattgaatattttaagagattgatgaagtctgagtttgaa 100  Q
    |||||| |||||||||||||||   ||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22489990 caattatagtgtgcatatatatg--gatgacttaatgatatctgacagcgtaaaaaatgagattgaatattttaagagattgatgaagtctgagtttgaa 22490087  T
Q  101 atactaatatagaagaattgtcacactttcttggaaggaaacttgtgaaa 150  Q
    || |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  22490088 atgctaatatagaagaattgtcatactttcttgaaaggaaacttgtgaaa 22490137  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 22490161 - 22490221
Alignment:
Q  146 tgaaagaaattatgtta-tgaggtgctaaaaatgttcaatatgatgaagtgtaatgttaca 205  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  22490161 tgaaagaaattatgtaagtgaggtgctaaaaatgttcaatatgatgaagtgtaatgttaca 22490221  T

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Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 25383415 - 25383268
Alignment:
Q  1 caattacagtgtgcatatatataatgatgacttaataataactggcagcgtaaaaaatgagattgaatattttaagagattgatgaagtctgagtttgaa 100  Q
    |||||| |||||||||||||||   ||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25383415 caattatagtgtgcatatatatg--gatgacttaatgatatctgacagcgtaaaaaatgagattgaatattttaagagattgatgaagtctgagtttgaa 25383318  T
Q  101 atactaatatagaagaattgtcacactttcttggaaggaaacttgtgaaa 150  Q
    || |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  25383317 atgctaatatagaagaattgtcatactttcttgaaaggaaacttgtgaaa 25383268  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 25383244 - 25383177
Alignment:
Q  146 tgaaagaaattatgtta-tgaggtgctaaaaatgttcaatatgatgaagtgtaatgttacagagacat 212  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| || ||||||    
T  25383244 tgaaagaaattatgtaaatgaggtgctaaaaatgttcaatatgatgaagtgtaatgtttcaaagacat 25383177  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 10123184 - 10123235
Alignment:
Q  161 tatgaggtgctaaaaatgttcaatatgatgaagtgtaatgttacagagacat 212  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  10123184 tatgaggtgctaaaaatgttcaatatgatgaagtgtaatgtttcaaagacat 10123235  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 28244940 - 28244991
Alignment:
Q  161 tatgaggtgctaaaaatgttcaatatgatgaagtgtaatgttacagagacat 212  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  28244940 tatgaggtgctaaaaatgttcaatatgatgaagtgtaatgtttcaaagacat 28244991  T

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