View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11671_high_21 (Length: 242)
Name: NF11671_high_21
Description: NF11671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11671_high_21 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 47816894 - 47816672
Alignment:
| Q |
20 |
gagcatcatcggtatagcggagcttgtggtgaatctcatagtgctctctaagccctttcaatatttgtatggtttcactcacagttggctctggcacttt |
119 |
Q |
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| T |
47816894 |
gagcatcatcggtatagcggagcttgtggtgaatctcatagcgctctctaagccctttcaatatttgtatggtttcactcacagttggctctagcacttt |
47816795 |
T |
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| Q |
120 |
aactggctggaatttcctctccaaagctggatcttcttcaatgtgcttcctgtattcatctagtgttgtggctcatatacactgcataagtatttaaatt |
219 |
Q |
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| T |
47816794 |
aactggctggaatttcctctccaaagctggatcttcttcaatgtgcttcctgtattcatctagtgttgtggctcatatacactgcataagtatttaaatt |
47816695 |
T |
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| Q |
220 |
tatttacttaagagatggaagtt |
242 |
Q |
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| T |
47816694 |
tatttacttaagagatggaagtt |
47816672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 47381432 - 47381207
Alignment:
| Q |
17 |
caagagcatcatcggtatagcggagcttgtggtgaatctcatagtgctctctaagccctttcaatatttgtatggtttcactcacagttggctctggcac |
116 |
Q |
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| T |
47381432 |
caagagcatcatcggtataacggagcttgtggtgaatctcatagcgctctctaagccctttcaatatttgtatggtttcactcacagttggctctggcac |
47381333 |
T |
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| Q |
117 |
tttaactggctggaatttcctctccaaagctggatcttcttcaatgtgcttcctgtattcatctagtgttgtggctcatatacactgcataagtatttaa |
216 |
Q |
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| T |
47381332 |
tttaactggctggaatctcctctccaaagctggatctttttcaatgtgcttcctgtattcatctagtgttgtggctcctatacactgcataagtatttaa |
47381233 |
T |
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| Q |
217 |
atttatttacttaagagatggaagtt |
242 |
Q |
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| T |
47381232 |
atttatttacttaagagatgaaagtt |
47381207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 45113516 - 45113326
Alignment:
| Q |
18 |
aagagcatcatcggtatagcggagcttgtggtgaatctcatagtgctctctaagccctttcaatatttgtatggtttcactcacagttggctctggcact |
117 |
Q |
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|||||| ||||| ||||| ||||||||||||||||| ||||| | |||||||| ||||||| |||||||||||||||| |||||||| ||||| ||| |
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| T |
45113516 |
aagagcgtcatcagtatatcggagcttgtggtgaatttcataacgttctctaagtcctttcagtatttgtatggtttcatcaacagttggttctggtact |
45113417 |
T |
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| Q |
118 |
ttaactggctggaatttcctctccaaagctggatcttcttcaatgtgcttcctgtattcatctagtgttgtggctcatatacactgcataa |
208 |
Q |
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| T |
45113416 |
ttaactggctggaatcgtctctccaaagctgggtctttttcgatgtgcttcctgtattcatccaatgtggtggctccaatacactgcataa |
45113326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 40244142 - 40243945
Alignment:
| Q |
17 |
caagagcatcatcggtatagcggagcttgtggtgaatctcatagtgctctctaagccctttcaatatttgtatggtttcactcacagttggctctggcac |
116 |
Q |
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||||||| ||||| ||||| |||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
40244142 |
caagagcctcatcagtataacggagcttgtggtgaatctcatagcgctctctaagtcctttcagtatttgtatggtttcaggaacagttggctctggcac |
40244043 |
T |
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| Q |
117 |
tttaactggctggaatttcctctccaaagctggatcttcttcaatgtgcttcctgtattcatctagtgttgtggctcatatacactgcataagtattt |
214 |
Q |
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| T |
40244042 |
tttaacaggttggaatcgcctctccaaagctggatctttttcaatgtgcttcctatattcatctagagttgtggctcctatacactgcataagtattt |
40243945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 34055504 - 34055600
Alignment:
| Q |
98 |
tcacagttggctctggcactttaactggctggaatttcctctccaaagctggatcttcttcaatgtgcttcctgtattcat-ctagtgttgtggctc |
193 |
Q |
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| T |
34055504 |
tcacagttggctttggcactttcactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagtgttgtggctc |
34055600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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