View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11671_high_24 (Length: 239)
Name: NF11671_high_24
Description: NF11671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11671_high_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 13907895 - 13908118
Alignment:
| Q |
5 |
gtataacttacaaaacttattttgtattatttattactaatatttagaagaagaaaa-aatatattggtcatttcactctcaaaatatgcatatgtgtat |
103 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13907895 |
gtataacttaccaaacttattttgtattatttattactaacatttagaagaagaaaaaaatatattggtcatttcactctcaaaatatgcatatgtgtat |
13907994 |
T |
|
| Q |
104 |
gttatatatgtgaacacttacatggcttaaacggatatgaagtggattaggtttgaagaatcacgaaatatgacaaa--actggaagaaaattctatggt |
201 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
13907995 |
gttatatatgtgaacagtgacatgacttaaacggatatgaagtggattagatttgaagaatcacgaaatatgacaaaacactggaagaaaattctagggt |
13908094 |
T |
|
| Q |
202 |
gcagaaatttgtggtaagttaatg |
225 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
13908095 |
gtagaaatttgtggtaagttaatg |
13908118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University