View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11671_high_25 (Length: 224)

Name: NF11671_high_25
Description: NF11671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11671_high_25
NF11671_high_25
[»] chr5 (3 HSPs)
chr5 (24-207)||(42802432-42802615)
chr5 (139-207)||(25514922-25514990)
chr5 (73-207)||(25520303-25520452)
[»] chr7 (5 HSPs)
chr7 (51-114)||(48972-49035)
chr7 (143-207)||(49093-49157)
chr7 (51-103)||(25851705-25851757)
chr7 (55-94)||(25851612-25851651)
chr7 (24-57)||(25851772-25851805)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 24 - 207
Target Start/End: Original strand, 42802432 - 42802615
Alignment:
Q  24 tactgatgcatcctcctcctcaatcacaaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaatccaccccctcccctccccttcct 123  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42802432 tactgatgcatcctcctcctcgatcacaaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaatccaccccctcccctccccttcct 42802531  T
Q  124 ttttattattaggtctgtctatgtctatgtaagtagtaattatctcaaatgtctcaaaatgaggtcggcattaagagtagtcta 207  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  42802532 ttttattattaggtctgtctatgtccatgtaagtagtaattatctcaaatgtcccaaaatgaggttggcattaagagtagtcta 42802615  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 25514990 - 25514922
Alignment:
Q  139 tgtctatgtctatgtaagtagtaattatctcaaatgtctcaaaatgaggtcggcattaagagtagtcta 207  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  25514990 tgtctatgtctatgtaagtagtaattatctcaaatgtcccaagatgaggtcggcattaagagtagtcta 25514922  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 73 - 207
Target Start/End: Original strand, 25520303 - 25520452
Alignment:
Q  73 ctcccatcctcttttggaaatgcttaatccaccccctcccctcccctt---------cctttttattattaggtctgtctatgtcta------tgtaagt 157  Q
    |||||||||||| ||||||||| |||||||||||| |||||| |  ||         ||||||||||||||||||||||||||||||      |||||||    
T  25520303 ctcccatcctctcttggaaatgtttaatccaccccatccccttcgttttggagtctccctttttattattaggtctgtctatgtctatttctatgtaagt 25520402  T
Q  158 agtaattatctcaaatgtctcaaaatgaggtcggcattaagagtagtcta 207  Q
    |||||||||||||||||||  |||||||||||||||||||||||| ||||    
T  25520403 agtaattatctcaaatgtcctaaaatgaggtcggcattaagagtaatcta 25520452  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 48972 - 49035
Alignment:
Q  51 aaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaatccaccccctcccct 114  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  48972 aaatgaagacagcagtaagtcactcccatcctcttttggaaatgcttaatacaccccctcccct 49035  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 49093 - 49157
Alignment:
Q  143 tatgtctatgtaagtagtaattatctcaaatgtctcaaaatgaggtcggcattaagagtagtcta 207  Q
    ||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  49093 tatgtttatgtaagtagtaattatcttaaatgtcccaaaatgaggtcggcattaagagtagtcta 49157  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 25851757 - 25851705
Alignment:
Q  51 aaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaatcca 103  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  25851757 aaatgaagacatcagtaactcactcccttcctcttttggaaatgcttaatcca 25851705  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 25851612 - 25851651
Alignment:
Q  55 gaagacagcagtaactcactcccatcctcttttggaaatg 94  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25851612 gaagacagcagtaactcactcccatcctcttttggaaatg 25851651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 25851805 - 25851772
Alignment:
Q  24 tactgatgcatcctcctcctcaatcacaaatgaa 57  Q
    |||||||||||||||||||| |||||||||||||    
T  25851805 tactgatgcatcctcctcctaaatcacaaatgaa 25851772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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