View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11671_high_3 (Length: 530)
Name: NF11671_high_3
Description: NF11671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11671_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 526
Target Start/End: Complemental strand, 388388 - 387884
Alignment:
| Q |
18 |
aatgctacctcagtttcactccctctttccttcaacatcttcagctcggttttcgttttctcaagctctgcctccagcttctttactgtatcaaaaatgt |
117 |
Q |
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| T |
388388 |
aatgctacctcagtttcactccctctttccttcaacatcttcagctcggttttcgttttctcaagctctgcctccagcttctttattgtatcaaaaatgt |
388289 |
T |
|
| Q |
118 |
tgttnnnnnnnnnnnnnnnnntaaatggtggtttgatgggactaattggtgatggtgatgacggcattgatctccacgatggttctctcttaatagttac |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
388288 |
tgttttcttcttcttctt---taaatggtggtttgatgggactaattggtgatggtgatgacggcattgatctccacgatggttctctcttaatagttac |
388192 |
T |
|
| Q |
218 |
cgaaggagaataataaggtgcggtactggaagtgtctgagaatgagaatggttttggagatggagagtatatttctccaacaagaagccgttctccgaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
388191 |
cgaaggagaataataaggtgcggtactggaagtgtctgagaatgagaatggttttggagatggagagtatatttctccaacaagaagccgttctccgaag |
388092 |
T |
|
| Q |
318 |
atggctacggcttctttgacggagctgaaaggacgagaggtgtccacggtggagctataatcagcggtaggggtcaccgacataggttcatgttccattg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
388091 |
atggctacggcttctttgacggagctgaaaggacgagaggtgtccacggtggagctataatcagcggtaggggtcaccgacataggttcatgttccattg |
387992 |
T |
|
| Q |
418 |
tannnnnnnnnnnnnnnnnnnnnaaggatatgggaattgttatgatcagtactagtatttgtttgaagccaggttggtgttttaattaattgttggtttc |
517 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
387991 |
ta-tttgttttgtttgttgaaggaaggatatgggaattgttatgatcagtactagtatttgtttgaagccaggttggtgttttaattaattgttggtttc |
387893 |
T |
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| Q |
518 |
tctgcttct |
526 |
Q |
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| T |
387892 |
tttgcttct |
387884 |
T |
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