View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11671_low_1 (Length: 762)

Name: NF11671_low_1
Description: NF11671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11671_low_1
NF11671_low_1
[»] chr7 (2 HSPs)
chr7 (13-505)||(23370394-23370886)
chr7 (536-747)||(23370917-23371128)
[»] scaffold0009 (1 HSPs)
scaffold0009 (556-607)||(189131-189182)
[»] chr6 (1 HSPs)
chr6 (622-676)||(17590573-17590627)
[»] chr8 (1 HSPs)
chr8 (620-704)||(28210321-28210405)
[»] chr1 (4 HSPs)
chr1 (620-736)||(24114666-24114781)
chr1 (646-685)||(18889145-18889184)
chr1 (620-689)||(12871686-12871755)
chr1 (620-697)||(34335075-34335152)
[»] chr2 (3 HSPs)
chr2 (560-611)||(17484928-17484979)
chr2 (552-594)||(6797272-6797314)
chr2 (556-601)||(8964460-8964505)
[»] scaffold0005 (1 HSPs)
scaffold0005 (569-611)||(201761-201803)
[»] chr4 (2 HSPs)
chr4 (569-611)||(14615573-14615615)
chr4 (620-689)||(24825714-24825783)
[»] chr3 (1 HSPs)
chr3 (620-689)||(2147792-2147861)


Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 13 - 505
Target Start/End: Original strand, 23370394 - 23370886
Alignment:
Q  13 agcataggagaaatataaaggtatatgcaaaacttgagaaaaagtgtttcaaatgaatgtaatattgcaagacttccattcaaagcattcatagataatg 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23370394 agcaaaggagaaatataaaggtatatgcaaaacttgagaaaaagtgtttcaaatgaatgtaatattgcaagacttccattcaaagcattcatagataatg 23370493  T
Q  113 atattgcaaattcactttaatgtggttattatctagcttctttttatagatcgatacattgaaaaaatatatcacatattcacacaaaactttaagactg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23370494 atattgcaaattcactttaatgtggttattatctagcttctttttatagatcgatacattgaaaaaagatatcacatattcacacaaaactttaagactg 23370593  T
Q  213 gtatatattggtcataacatttacatattgctcaacaattgctcttatatataatgtgggattttaactcacagcaaaaatgttgtgttcaaataaagaa 312  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23370594 gtatatattggtcataacatttacatattgctcaacaatttctcttatatataatgtgggattttaactcacagcaaaaatgttgtgttcaaataaagaa 23370693  T
Q  313 taaagccattggatacagtgagaaatgagacaaatagaaacaaaagagttataaagataggcacacacctgtttggatggagttaagatggagtacgtag 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23370694 taaagccattggatacagtgagaaatgagacaaatagaaacaaaagagttataaagataggcacacacctgtttggatggagttaagatggagtacgtag 23370793  T
Q  413 aacaagggaaaaaggtatttccaagactagacctagattgcagcggggaaagagagagaataggccttttttgttattcatttatatttatgt 505  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23370794 aacaagggaaaaaggtatttccaagactagacctagattgcagtggggaaagagagagaataggccttttttgttattcatttatatttatgt 23370886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 536 - 747
Target Start/End: Original strand, 23370917 - 23371128
Alignment:
Q  536 tctaacatatgtctccaaacactctttaaagaccataaataataaatatttatgaaaatttgtgtatttaatatatcacatagaaaatcaaaacaatcaa 635  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23370917 tctaacatatgtctccaaacactctttaaagaccataaataataaatatttatgaaaatttgtgtatttaatatatcacatagaaaatcaaaacaatcaa 23371016  T
Q  636 aatcgtgttaagacgatgaaatcacgcaaacaaatgaaagaaaattgaaaatatatataaatgacttatgcaactaagagatcaaagaaaaacaatttgg 735  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23371017 aatcgtgttaagacgatgaaatcacgcaaacaaatgaaagaaaattaaaaatatatataaatgacttatgcaactaagagatcaaagaaaaacaatttgg 23371116  T
Q  736 atatgtgatttt 747  Q
    ||||||||||||    
T  23371117 atatgtgatttt 23371128  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 556 - 607
Target Start/End: Complemental strand, 189182 - 189131
Alignment:
Q  556 actctttaaagaccataaataataaatatttatgaaaatttgtgtatttaat 607  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||||| |||||    
T  189182 actctttaatgaccataaataataagtatttatgaaaatatgtgtaattaat 189131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 622 - 676
Target Start/End: Complemental strand, 17590627 - 17590573
Alignment:
Q  622 atcaaaacaatcaaaatcgtgttaagacgatgaaatcacgcaaacaaatgaaaga 676  Q
    ||||||| || ||||||||||||||||||| ||||||||  ||||||||||||||    
T  17590627 atcaaaagaaacaaaatcgtgttaagacgacgaaatcacaaaaacaaatgaaaga 17590573  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 620 - 704
Target Start/End: Complemental strand, 28210405 - 28210321
Alignment:
Q  620 aaatcaaaacaatcaaaatcgtgttaagacgatgaaatcacgcaaacaaatgaaagaaaattgaaaatatatataaatgacttat 704  Q
    |||||||||||| |||||| ||||||||||| |||| ||||  ||||||| |||| || | | ||||||| ||||||| ||||||    
T  28210405 aaatcaaaacaaacaaaattgtgttaagacggtgaactcacaaaaacaaacgaaataagactaaaaatatgtataaatcacttat 28210321  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 620 - 736
Target Start/End: Original strand, 24114666 - 24114781
Alignment:
Q  620 aaatcaaaacaatcaaaatcgtgttaagacgatgaaatcacgcaaacaaatgaaagaaaattgaaaatatatataaatgacttatgcaactaagagatca 719  Q
    |||||||||||| |||| |||||| ||||| | ||||||||  |||||||| ||| || ||||||||||| |  |||| ||||||  |||||| | |  |    
T  24114666 aaatcaaaacaaacaaagtcgtgtaaagacaacgaaatcacaaaaacaaataaaataatattgaaaatatgttaaaatcacttatttaactaa-aaaaga 24114764  T
Q  720 aagaaaaacaatttgga 736  Q
    |||||||||||||||||    
T  24114765 aagaaaaacaatttgga 24114781  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 646 - 685
Target Start/End: Complemental strand, 18889184 - 18889145
Alignment:
Q  646 agacgatgaaatcacgcaaacaaatgaaagaaaattgaaa 685  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  18889184 agacgatgaaatcaccaaaacaaatgaaagaaaattgaaa 18889145  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 689
Target Start/End: Complemental strand, 12871755 - 12871686
Alignment:
Q  620 aaatcaaaacaatcaaaatcgtgttaagacgatgaaatcacgcaaacaaatgaaagaaaattgaaaatat 689  Q
    |||||||||||| || | |||||  ||||||| ||||||||  ||||||| ||||||||| |||||||||    
T  12871755 aaatcaaaacaaacagagtcgtgcaaagacgacgaaatcacaaaaacaaacgaaagaaaactgaaaatat 12871686  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 697
Target Start/End: Original strand, 34335075 - 34335152
Alignment:
Q  620 aaatcaaaacaatcaaaatcgtgttaagacgatgaaatcacgcaaacaaatgaaagaaaattgaaaatatatataaat 697  Q
    |||| ||||||| || | || ||| |||| |||||||||||  ||||||| |||| |||||||||||||| |||||||    
T  34335075 aaattaaaacaaacagagtcatgtaaagatgatgaaatcacaaaaacaaacgaaataaaattgaaaatatgtataaat 34335152  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 611
Target Start/End: Original strand, 17484928 - 17484979
Alignment:
Q  560 tttaaagaccataaataataaatatttatgaaaatttgtgtatttaatatat 611  Q
    |||||||| ||||| | |||||||||||||||||| ||| ||||||||||||    
T  17484928 tttaaagatcataagtgataaatatttatgaaaatatgtatatttaatatat 17484979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 552 - 594
Target Start/End: Complemental strand, 6797314 - 6797272
Alignment:
Q  552 aaacactctttaaagaccataaataataaatatttatgaaaat 594  Q
    ||||||||||||| || ||||||||| ||||||||||||||||    
T  6797314 aaacactctttaaggatcataaataacaaatatttatgaaaat 6797272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 601
Target Start/End: Complemental strand, 8964505 - 8964460
Alignment:
Q  556 actctttaaagaccataaataataaatatttatgaaaatttgtgta 601  Q
    ||||||||| |||||||  |||||| ||||||||||||||||||||    
T  8964505 actctttaaggaccatatgtaataagtatttatgaaaatttgtgta 8964460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 569 - 611
Target Start/End: Original strand, 201761 - 201803
Alignment:
Q  569 cataaataataaatatttatgaaaatttgtgtatttaatatat 611  Q
    |||||||||||||||||||| ||||| |||||| |||||||||    
T  201761 cataaataataaatatttataaaaatgtgtgtaattaatatat 201803  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 569 - 611
Target Start/End: Complemental strand, 14615615 - 14615573
Alignment:
Q  569 cataaataataaatatttatgaaaatttgtgtatttaatatat 611  Q
    |||||||||||||||||||| ||||| |||||| |||||||||    
T  14615615 cataaataataaatatttataaaaatgtgtgtaattaatatat 14615573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 689
Target Start/End: Complemental strand, 24825783 - 24825714
Alignment:
Q  620 aaatcaaaacaatcaaaatcgtgttaagacgatgaaatcacgcaaacaaatgaaagaaaattgaaaatat 689  Q
    |||||||||||| || | |||||  ||||||| ||||||||  ||||||| |||||||||| ||||||||    
T  24825783 aaatcaaaacaaacagagtcgtgcaaagacgacgaaatcacaaaaacaaacgaaagaaaatagaaaatat 24825714  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 689
Target Start/End: Complemental strand, 2147861 - 2147792
Alignment:
Q  620 aaatcaaaacaatcaaaatcgtgttaagacgatgaaatcacgcaaacaaatgaaagaaaattgaaaatat 689  Q
    |||||||||||| || | |||||   |||||| ||||||||  ||||||||||||||||| |||||||||    
T  2147861 aaatcaaaacaaacagagtcgtgcagagacgacgaaatcacaaaaacaaatgaaagaaaactgaaaatat 2147792  T

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