View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11671_low_12 (Length: 334)

Name: NF11671_low_12
Description: NF11671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11671_low_12
NF11671_low_12
[»] chr3 (4 HSPs)
chr3 (12-219)||(29643167-29643367)
chr3 (264-316)||(29643413-29643465)
chr3 (139-196)||(29642400-29642457)
chr3 (86-130)||(29642482-29642526)
[»] chr8 (8 HSPs)
chr8 (12-197)||(42503789-42503990)
chr8 (86-138)||(42503101-42503153)
chr8 (89-138)||(11519426-11519475)
chr8 (139-187)||(42503036-42503084)
chr8 (104-138)||(7870332-7870366)
chr8 (89-138)||(11520035-11520084)
chr8 (89-130)||(12203287-12203328)
chr8 (89-130)||(12447715-12447756)
[»] chr7 (3 HSPs)
chr7 (89-138)||(43845832-43845881)
chr7 (89-138)||(4126768-4126817)
chr7 (89-138)||(39021009-39021058)
[»] chr1 (2 HSPs)
chr1 (89-138)||(7338743-7338792)
chr1 (151-187)||(49618308-49618344)
[»] chr2 (2 HSPs)
chr2 (153-197)||(6205448-6205492)
chr2 (151-187)||(35029884-35029920)
[»] chr4 (2 HSPs)
chr4 (150-187)||(32159543-32159580)
chr4 (150-186)||(32158810-32158846)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 29643167 - 29643367
Alignment:
Q  12 agagacaactgtgagattatgagagaaggaagaaagtgagtttgtatcggtacaagagcgcgcatgcnnnnnnnggaattaaagaattgccttttccaaa 111  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||       ||||||||||||||| ||||||||||    
T  29643167 agagacaattgtgagattatgaaagaaggaagaaagtgagtttgtatcggtataagagcgcgcatgctttttttggaattaaagaattgtcttttccaaa 29643266  T
Q  112 ccttttaatcacaaccattaattttatacatctatcatatgaaatagggtaaattgaggaagcctaaatggagcaacaatggactcaataaaaacctttt 211  Q
    ||||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  29643267 ccttttaatcacaaccattaattttata-------gatatgaaattgggtaaattgaggaagcctaaatggagcaacgatggactcaataaaaacccttt 29643359  T
Q  212 catactaa 219  Q
    ||||||||    
T  29643360 catactaa 29643367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 29643413 - 29643465
Alignment:
Q  264 tgaatcttgagtgacgaacccaagaagaaggcaatggaagctcatgtctgaac 316  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  29643413 tgaatcttgggtgacgaacccaagaagaaggcaatgcaagctcatgtctgaac 29643465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 29642457 - 29642400
Alignment:
Q  139 acatctatcatatgaaatagggtaaattgaggaagcctaaatggagcaacaatggact 196  Q
    |||||| | ||||||||| || |||||||||||||| |||||||||||| ||||||||    
T  29642457 acatctttgatatgaaatgggataaattgaggaagcttaaatggagcaaaaatggact 29642400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 29642526 - 29642482
Alignment:
Q  86 ggaattaaagaattgccttttccaaaccttttaatcacaaccatt 130  Q
    ||||||||||||||| |||||||||| |||||||||||| |||||    
T  29642526 ggaattaaagaattgtcttttccaaatcttttaatcacatccatt 29642482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 42503789 - 42503990
Alignment:
Q  12 agagacaactgtgagattatgagagaaggaagaaagtgagtttgtatcggtacaagagcgcgcatgcnnnnnnnggaattaaagaattgccttttccaaa 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| || | ||       ||||||||||||||||||||||||||    
T  42503789 agaggcaactgtgagattatgagagaaggaagaaagtgagtttgtatcagtataagagcacgtaggctttttttggaattaaagaattgccttttccaaa 42503888  T
Q  112 ccttttaatcacaaccattaattttat----------------acatctatcatatgaaatagggtaaattgaggaagcctaaatggagcaacaatggac 195  Q
    ||||||||||||| |||||||||||||                |||||||| ||||| ||| ||||||||||||||||||||||||||||||  ||||||    
T  42503889 ccttttaatcacagccattaattttattttttccacatgtcacacatctatgatatggaatggggtaaattgaggaagcctaaatggagcaaagatggac 42503988  T
Q  196 tc 197  Q
    ||    
T  42503989 tc 42503990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 42503153 - 42503101
Alignment:
Q  86 ggaattaaagaattgccttttccaaaccttttaatcacaaccattaattttat 138  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  42503153 ggaattaaagaattgccttttccaaaccttttaatcacagccattgattttat 42503101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 11519475 - 11519426
Alignment:
Q  89 attaaagaattgccttttccaaaccttttaatcacaaccattaattttat 138  Q
    ||||||||||||| |||||||||||||||||||||| | ||| |||||||    
T  11519475 attaaagaattgctttttccaaaccttttaatcacagctattgattttat 11519426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 42503084 - 42503036
Alignment:
Q  139 acatctatcatatgaaatagggtaaattgaggaagcctaaatggagcaa 187  Q
    |||||||| ||||||||| ||||||||||||||| | ||||||||||||    
T  42503084 acatctatgatatgaaatggggtaaattgaggaaacttaaatggagcaa 42503036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 7870332 - 7870366
Alignment:
Q  104 tttccaaaccttttaatcacaaccattaattttat 138  Q
    ||||||||||||||||||||||||||| |||||||    
T  7870332 tttccaaaccttttaatcacaaccattgattttat 7870366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 11520035 - 11520084
Alignment:
Q  89 attaaagaattgccttttccaaaccttttaatcacaaccattaattttat 138  Q
    |||||| |||||  ||| |||||||||||||||||||||||| |||||||    
T  11520035 attaaataattgtttttaccaaaccttttaatcacaaccattgattttat 11520084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 12203287 - 12203328
Alignment:
Q  89 attaaagaattgccttttccaaaccttttaatcacaaccatt 130  Q
    ||||||||||||| |||| |||||||||||||||||| ||||    
T  12203287 attaaagaattgcttttttcaaaccttttaatcacaatcatt 12203328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 12447715 - 12447756
Alignment:
Q  89 attaaagaattgccttttccaaaccttttaatcacaaccatt 130  Q
    ||||||||||||| |||| |||||||||||||||||| ||||    
T  12447715 attaaagaattgcttttttcaaaccttttaatcacaatcatt 12447756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 43845832 - 43845881
Alignment:
Q  89 attaaagaattgccttttccaaaccttttaatcacaaccattaattttat 138  Q
    ||||||||||||| |||||||| || |||||||||||||||| |||||||    
T  43845832 attaaagaattgctttttccaagccatttaatcacaaccattgattttat 43845881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 4126817 - 4126768
Alignment:
Q  89 attaaagaattgccttttccaaaccttttaatcacaaccattaattttat 138  Q
    ||||||||||||  |||||||| || |||||||||||||||| |||||||    
T  4126817 attaaagaattgatttttccaagccatttaatcacaaccattgattttat 4126768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 39021058 - 39021009
Alignment:
Q  89 attaaagaattgccttttccaaaccttttaatcacaaccattaattttat 138  Q
    |||||| |||||| ||||||||||| ||||||||| |||||| |||||||    
T  39021058 attaaaaaattgctttttccaaaccatttaatcacgaccattgattttat 39021009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 7338743 - 7338792
Alignment:
Q  89 attaaagaattgccttttccaaaccttttaatcacaaccattaattttat 138  Q
    |||||||| |||||||||||| | |||||||||||||||||| |||||||    
T  7338743 attaaagatttgccttttccacaacttttaatcacaaccattgattttat 7338792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 49618344 - 49618308
Alignment:
Q  151 tgaaatagggtaaattgaggaagcctaaatggagcaa 187  Q
    |||||| ||||||||||||||||||||||||||||||    
T  49618344 tgaaatggggtaaattgaggaagcctaaatggagcaa 49618308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 6205448 - 6205492
Alignment:
Q  153 aaatagggtaaattgaggaagcctaaatggagcaacaatggactc 197  Q
    |||| ||||||||||||||||||||||||||||||  ||||||||    
T  6205448 aaatggggtaaattgaggaagcctaaatggagcaaagatggactc 6205492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 35029884 - 35029920
Alignment:
Q  151 tgaaatagggtaaattgaggaagcctaaatggagcaa 187  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  35029884 tgaaatggggtaaattgaggaaacctaaatggagcaa 35029920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 32159543 - 32159580
Alignment:
Q  150 atgaaatagggtaaattgaggaagcctaaatggagcaa 187  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  32159543 atgaaatggggtaaattgaggaaacctaaatggagcaa 32159580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 32158846 - 32158810
Alignment:
Q  150 atgaaatagggtaaattgaggaagcctaaatggagca 186  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  32158846 atgaaatggggtaaattgaggaaacctaaatggagca 32158810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University