View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11671_low_13 (Length: 313)

Name: NF11671_low_13
Description: NF11671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11671_low_13
NF11671_low_13
[»] chr1 (1 HSPs)
chr1 (16-306)||(25530961-25531251)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 25531251 - 25530961
Alignment:
Q  16 aataattagcagtaataataacaacttattattaccattcgagaacacccttgagttttcaatggattcgcgaaatccttgcgaagatttcaaagaatct 115  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25531251 aataattagcagcaataataacaacttattattaccattcaagaacacccttgaggtttcaatggattcgcgaaatccttgcgaagatttcaaagaatct 25531152  T
Q  116 attgtggaaatggtggaggcttatggtattaacgattgggaaaccctagaaaagcttttgagttggtattttgaagttaatgagaaaagaaatcatggat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25531151 attgtggaaatggtggaggcttatggtattaacgattgggaaaccctagaaaagcttttgagttggtattttgaagttaatgagaaaagaaatcatggat 25531052  T
Q  216 ttattattgatgcnnnnnnngatttatttgttagatttgctcatagttcaccaaattgttctcctttatctattcatagttgttcttctct 306  Q
    |||||||||||||       ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25531051 ttattattgatgctttttttgatttatttgttagatttgatcatggttcaccaaattgttctcctttatctattcatagttgttcttctct 25530961  T

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