View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11671_low_16 (Length: 268)
Name: NF11671_low_16
Description: NF11671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11671_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 84 - 251
Target Start/End: Complemental strand, 41454158 - 41453997
Alignment:
| Q |
84 |
taaactcacgtttgaggtttctaatcgtacaaccaaacgagtgcaaaattagtttaaaaattattggttgtatcatcacatgaaggagggtaatgttgag |
183 |
Q |
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| T |
41454158 |
taaactcacgtttgaggtttctaatcgtacaacctaacgagtgcttaattagtttaaaaattattggttgtatcatgacatgaaggagggtaatgttgag |
41454059 |
T |
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| Q |
184 |
annnnnnnatatgtagtgtagggtttcttttctttggtataaacggggcaaaagaaacaactctaaaa |
251 |
Q |
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| T |
41454058 |
atatttttata-----tgtagggtttcttttctttggtataaa-ggggcaaaagaaacaactctaaaa |
41453997 |
T |
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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 41454215 - 41454166
Alignment:
| Q |
47 |
tttgaaaaatggttacccaaacacttgtattttgtaataaactcacgttt |
96 |
Q |
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| T |
41454215 |
tttgaaaaatggttacccaaacacttgtattttttaataaactcacgttt |
41454166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 41457724 - 41457673
Alignment:
| Q |
1 |
ataaacatggatattgggagcagctattattaaaatatctaatcaatttgaa |
52 |
Q |
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| T |
41457724 |
ataaacatggatattgggagcagttattattaaaataactaatcaagttgaa |
41457673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 28751967 - 28751911
Alignment:
| Q |
40 |
taatcaatttgaaaaatggttacccaaacacttgtattttgtaataaactcacgttt |
96 |
Q |
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| T |
28751967 |
taatcaatttgaaaaatggttacccaaacacttttattttctaataaactcacgttt |
28751911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 32737082 - 32737173
Alignment:
| Q |
41 |
aatcaatttgaaaaatggttacccaaacacttgtattttgtaataaactcacgtttgaggtttctaatcgtacaaccaaacgagtgcaaaatt |
133 |
Q |
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| T |
32737082 |
aatcaatttaaaaaatgagtacccaaacacttttttttt-taacaaactcacgtttgaggtttgcaaacgcacaaccaaacgagtgctaaatt |
32737173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 25060817 - 25060735
Alignment:
| Q |
41 |
aatcaatttgaaaaatggttacccaaacacttgtattttgtaataaactcacgtttgaggtttctaatcgtacaaccaaacgag |
124 |
Q |
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||||||||| |||| |||||| |||||||||| |||||| ||| |||||||||||||||| || ||| || ||||| ||||||| |
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| T |
25060817 |
aatcaatttaaaaattggttatccaaacactt-tattttttaacaaactcacgtttgaggcttgtaaacgcacaacaaaacgag |
25060735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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