View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11671_low_17 (Length: 261)
Name: NF11671_low_17
Description: NF11671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11671_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 245
Target Start/End: Complemental strand, 48517855 - 48517615
Alignment:
| Q |
5 |
tgaacattcatggagtacgagaccaggagaaggaaaatgataagagaaatttcattaagtgctactataagagagtaacccttcattttcttttacagtc |
104 |
Q |
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| T |
48517855 |
tgaacattcatggagtacgagaccaggagaaggaagatgataagagaaatttcattaagtgctactataagagagtaacccttcattttcttatacagtc |
48517756 |
T |
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| Q |
105 |
ttgtagctgttaagcttctttactaattaggacaaattaatgttagggaggggaagaggcaaataaacaaagactgttttgcaaaactgcagggtggagt |
204 |
Q |
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| T |
48517755 |
ttgtagctgttaagcttctttactaattaggacaaattaatgttagggaggggaagaggcaaataaacaaagactgttttgcaaaactgcaggatggagt |
48517656 |
T |
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| Q |
205 |
atggtgaatttagtatttatatacagtttgtgtgtgtgaag |
245 |
Q |
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| T |
48517655 |
atggtgaatgtagtatttatatacagtttgtgtgtgtgaag |
48517615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 10258262 - 10258119
Alignment:
| Q |
5 |
tgaacattcatggagtacgagaccaggagaaggaaaatgataagagaaatttcattaa---gtgctactataagagagtaacccttcattttcttttaca |
101 |
Q |
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||||||||||||||||| |||| || ||| |||||||||||||||||||||||||||| || ||| ||| ||| |||||||| |||||||||| |||| |
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| T |
10258262 |
tgaacattcatggagtaagagagcaagaggaggaaaatgataagagaaatttcattaaacagtactattattagacagtaacccatcattttcttgtaca |
10258163 |
T |
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| Q |
102 |
gtcttgtagctgttaagcttctttactaattaggacaaattaat |
145 |
Q |
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| T |
10258162 |
gtcttgtaggtgttaagattctttcctaattaggacaaattaat |
10258119 |
T |
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