View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11671_low_18 (Length: 253)
Name: NF11671_low_18
Description: NF11671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11671_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 11174141 - 11173902
Alignment:
| Q |
1 |
aaactattacaagctttgattattgttacttgtttagttctattgaatataatgacacatacacaaacaccgaacacaacactgacacgttgacactcgt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
11174141 |
aaactattacaagctttgattatttttacttgtttagttctatttaatatattgacacatacacaaacactggacacaacactgacacgttgacactcgt |
11174042 |
T |
|
| Q |
101 |
aatgatttgataaatagatgtaactgaatgtaaccatatgtgtcagtgtcgtattggtatcagataccaaacacgtcttcaatttgaagtgtcggtgcta |
200 |
Q |
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| T |
11174041 |
aatgatttgataaattgctgtaact----------atatgtgtcagtgtcgtattggtatcagataccaaacacgtcttcaatttgaagtgtcagtgcta |
11173952 |
T |
|
| Q |
201 |
cgtaggtttagtttacgtctcataatttagttgtaacaatacttattgct |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11173951 |
cgtaggtttagtttacgtctcataatttagttgtaacaatacttattgct |
11173902 |
T |
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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 6213865 - 6213790
Alignment:
| Q |
132 |
aaccatatgtgtcagtgtcgtattggtatcagataccaaacacgtcttcaatttgaagtgtcggtgctacgtaggt |
207 |
Q |
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| T |
6213865 |
aaccatatgtgtcagtgtcgtgttggtgtcagacaacaaacaagccttcaatgtgaagtgtcggagctacataggt |
6213790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 10214960 - 10214988
Alignment:
| Q |
173 |
acgtcttcaatttgaagtgtcggtgctac |
201 |
Q |
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| T |
10214960 |
acgtcttcaatttgaagtgtcggtgctac |
10214988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 5453671 - 5453715
Alignment:
| Q |
53 |
tgacacatacacaaacaccgaacacaacactgacacgttgacact |
97 |
Q |
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| T |
5453671 |
tgacacatacacaaacaccaaacacaacactaacacgtagacact |
5453715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 43328449 - 43328533
Alignment:
| Q |
74 |
acacaacactgacacgttgacactcgtaatgatttgataaatagatgtaactgaatgtaaccatatgtgtcagtgtcgtattggt |
158 |
Q |
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| T |
43328449 |
acacaacactgacacgttgacacttataataatttgagaaaatgaaataatttaatgtaaccacatgtgtcattgtcgtgttggt |
43328533 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 4628324 - 4628293
Alignment:
| Q |
170 |
aacacgtcttcaatttgaagtgtcggtgctac |
201 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
4628324 |
aacacgtcttcaatttgaagtgtcggtgctac |
4628293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 205
Target Start/End: Original strand, 10794610 - 10794645
Alignment:
| Q |
170 |
aacacgtcttcaatttgaagtgtcggtgctacgtag |
205 |
Q |
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|||||||||||||| ||||||||||||||||||||| |
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| T |
10794610 |
aacacgtcttcaatatgaagtgtcggtgctacgtag |
10794645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 36348651 - 36348619
Alignment:
| Q |
169 |
aaacacgtcttcaatttgaagtgtcggtgctac |
201 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
36348651 |
aaacacgacttcaatttgaagtgtcggtgctac |
36348619 |
T |
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