View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11671_low_2 (Length: 651)

Name: NF11671_low_2
Description: NF11671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11671_low_2
NF11671_low_2
[»] chr1 (2 HSPs)
chr1 (11-634)||(4185759-4186375)
chr1 (85-260)||(4195157-4195333)


Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 11 - 634
Target Start/End: Complemental strand, 4186375 - 4185759
Alignment:
Q  11 cagagacggcgcagtcacagaggtaacttccggtgaagaaggtgttgaggcggttgtaggcggtnnnnnnnnnnaaagcaaggaatgcttcagtaacctc 110  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||    
T  4186375 cagagacggcgcagtcacagaggtagcttccggtgaagaaggtgttgaggcggttgtaggcggtgggagggtggaaagcaaggaatgcttcagtaacctc 4186276  T
Q  111 ttggccggcaaggctgagtagagggaattcgccaccggggtggtgggtggcccattcagagacgtcgtatatctttccgtcaatagcgatccatagtcgc 210  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| |||||||| ||||               
T  4186275 ttggccggcaaggctgattagagggaattcgccaccgggatggtggttggcccatttagagacgtcgtatatcttgccgtcaatggcga----------- 4186187  T
Q  211 cacgtttgttgtgtttttggagttcttgcagtgaaatgtaggttggttttcccaacagttcatttcgcgccattgtacatagaaagaagagaagatta-- 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||      
T  4186186 cacgtttgttgtgtttttggagttcttgcagtgaaatgtaggttggttttcccaacagttcattgcgcgccattgtacatagaaagaagagaagattagt 4186087  T
Q  309 ---tgggtgtgtttgctgctttcagc-tttttgtagaggtaagtagagaaaatgtagtgtgcatggacaaataggcacgacgcacaactctctccggagg 404  Q
       ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4186086 gtgtgggtgtgtttgctgctttcagcctttttgtagaggtaagtagagaaaatgtagtgtgcatggacaaataggcacgacgcacaactctctccggagg 4185987  T
Q  405 ccgaaggagtgctcctctcgtcttgaagtcataatctaatccccaggccttcacatttttgtgactgatccttgaagtcatattctaattagagggaaag 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  4185986 ccgaaggagtgctcctctcgtcttgaagtcataatctaatccccaggccttcacatttttgtgactgatccttgaagtc--attctaattagagggaaag 4185889  T
Q  505 actaacttatttttctaatctatatatatagaactcaaaagaaataaaacaagttgtctgcgaagaagataagggtgattggatgaatgaatgaatgaat 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4185888 actaacttatttttctaatctatatatatagaactcaaaagaaataaaacaagttgtctgcgaagaagataagggtgattggatgaatgaatgaatgaat 4185789  T
Q  605 attagtcacgttgtgcaccattggaaattt 634  Q
    ||||||||||||||||||||||||||||||    
T  4185788 attagtcacgttgtgcaccattggaaattt 4185759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 85 - 260
Target Start/End: Complemental strand, 4195333 - 4195157
Alignment:
Q  85 aaagcaaggaatgcttcagtaacctcttggccggcaaggctgagtagagggaattcgccaccggggtggtgggtggcccattcagagacgtcgtatatct 184  Q
    ||||| |||||||| || || || ||||||||||| ||| |||| ||||| |  ||||| ||||| |||||| |||||||||  || |||||||| ||||    
T  4195333 aaagcgaggaatgcatcggtgacatcttggccggcgaggttgaggagaggaagctcgccgccgggatggtggttggcccattttgaaacgtcgtagatct 4195234  T
Q  185 ttccgtcaatagcgatccatag-tcgccacgtttgttgtgtttttggagttcttgcagtgaaatgtaggttggtttt 260  Q
    | |||||||| | |||||||   ||||| ||  ||||||||||||| |||||||||| |||||||||||||||||||    
T  4195233 tgccgtcaatggagatccatgcatcgccgcgagtgttgtgtttttgaagttcttgcaatgaaatgtaggttggtttt 4195157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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