View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11671_low_27 (Length: 216)
Name: NF11671_low_27
Description: NF11671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11671_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 6 - 199
Target Start/End: Complemental strand, 2576582 - 2576389
Alignment:
| Q |
6 |
aggaggagcagagattggagatttatcgatttcaattgaggtagtgggtgttgcagctcctgaaggtgagacaaaaagtgatggcgatgatttgagatgg |
105 |
Q |
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| T |
2576582 |
aggagtagcggagattggagatttatcgatttcaattgaggtagtgggtgttgcagctcctgaaggtgagacaaaaagtgatggcgatgatttgagatgg |
2576483 |
T |
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| Q |
106 |
agggtgtggtgtttgagaggaaaagaacaagataatggaattgggtgggatgatttgagggatgtagtgaatgggaaggagtaagaagatgctg |
199 |
Q |
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| T |
2576482 |
agggtatggtgtttgagaggaaaagaacaagataagggaattgggtgggatgatttaagggatgtagtgaatgggaaggagtaagaagatgctg |
2576389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 18851900 - 18852081
Alignment:
| Q |
7 |
ggaggagcagagattggagatttatcgatttcaattgaggtagtgggtgttgcagctcctgaaggtgagacaaaaagtgatggcgatgatttgagatgga |
106 |
Q |
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| T |
18851900 |
ggagtagcagagattgaggatttgtcaattttaatcaaggttgtgggtgttgcagctcttgaagctgagacaaacagtgatggcggtgatttgagatgga |
18851999 |
T |
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| Q |
107 |
gggtgtggtgtttgagaggaaaagaacaagataatggaattgggtgggatgatttgagggatgtagtgaatgggaaggagta |
188 |
Q |
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| T |
18852000 |
gggtatggtgtttgagatgaaaggaacaatagaagggaattaggtgagaagatttgggggatgttgtgaatgggaaggagta |
18852081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 12631146 - 12630973
Alignment:
| Q |
15 |
agagattggagatttatcgatttcaattgaggtagtgggtgttgcagctcctgaaggtgagacaaaaagtgatggcgatgatttgagatggagggtgtgg |
114 |
Q |
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| T |
12631146 |
agagattgcagatatgtcaattttaatggaggttgtgggtgttgcagctcgtgaatctgagacaaacagtgatggtagtgatttgagatggagcctatgg |
12631047 |
T |
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| Q |
115 |
tgtttgagaggaaaagaacaagataatggaattgggtgggatgatttgagggatgtagtgaatgggaaggagta |
188 |
Q |
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| T |
12631046 |
tgtttgagatgaaaggaataggagaggagaattaggtgagaagatttgggggatgttgtgaatgggaaggagta |
12630973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 50880485 - 50880311
Alignment:
| Q |
15 |
agagattggagatttatcgatttcaattgaggtagtgggtgttgcagctcc-tgaaggtgagacaaaaagtgatggcgatgatttgagatggagggtgtg |
113 |
Q |
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| T |
50880485 |
agagattgcagatctgtcaattttaattgaagtcgtgggtgttgcagctcggtgaagctaagacaaacagtgatggcggcgatttgagatggagggaatg |
50880386 |
T |
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| Q |
114 |
gtgtttgagaggaaaagaacaagataatggaattgggtgggatgatttgagggatgtagtgaatgggaaggagta |
188 |
Q |
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| T |
50880385 |
gtgtttgagatgaaaggaacaagagaagagaattaggtgagaatatttgggggatgttgtgaatgggaaggagta |
50880311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 11348027 - 11348125
Alignment:
| Q |
39 |
aattgaggtagtgggtgttgcagctcctgaaggtgagacaaaaagtgatggcgatgatttgagatggagggtgtggtgtttgagaggaaaagaacaaga |
137 |
Q |
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| T |
11348027 |
aattgaggttgtgggtgttgcagctcgtgaaactgagacaaacagtgatggtggtgatttgagatggagggtatggtgtttgagatgaaaggaacaaga |
11348125 |
T |
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