View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11671_low_4 (Length: 529)
Name: NF11671_low_4
Description: NF11671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11671_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 51 - 519
Target Start/End: Original strand, 39344006 - 39344491
Alignment:
| Q |
51 |
tggctggtttggttgctttgtggttttaatcttggacatcaaaggtagcaaaactatgactgagttgttgcatgtgaagaaagaacagaagggttgggga |
150 |
Q |
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| T |
39344006 |
tggctggtttggttgctttgtggttttaatcttggacatcaaaggtagccaaactatgactgagttgttgcatgtgaagaaagaacagaagggttgggga |
39344105 |
T |
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| Q |
151 |
aagctgcttgtggcagctagaaggatggtttggggattaaggttgattatggctctggtatgatatgaataattactaagtggtaataatgaaaatccat |
250 |
Q |
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| T |
39344106 |
aagctgcttgtggcagctagaaggatggtttggggattaaggttgattatggctctggtatgatatgaataattactaagtggtaataatgaaaatccat |
39344205 |
T |
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| Q |
251 |
gctgtaca--nnnnnnnnnnaattcaagcatcaaaatttgctttatc----------tttactgttaagattaataaagttcaaatttaacttgnnnnnn |
338 |
Q |
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| T |
39344206 |
gctgtacattttttttttttaattcaagcatcaaaatttgctttatctttctattagtttactgttaaaattaataaagttcaaatttaacttgaaaaaa |
39344305 |
T |
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| Q |
339 |
nnntccggtcctt--------tggtaaagagctcaagttttacttgnnnnnnnnnnngtgcttaaagtttttcactgaagaaccatgaaaaaaccctcat |
430 |
Q |
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| T |
39344306 |
aattccggtcctttagcttagtggtaaagagctcaagttttacttgcaaaaaaaaaagtgcttaaagtttttcactgaagaaccatgaaaaaaccctcat |
39344405 |
T |
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| Q |
431 |
ttttcgaaaaaccactaggattgcggtgtcttcccttcttcactggttgttggctgttgctcctcatcccctcgatgtggtttcctttg |
519 |
Q |
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| T |
39344406 |
ttttcgaaaaaccactaggattgcggtgtcttcc---cttcactggttgttggctgttgctcctcatcccctcgatgtagtttcctttg |
39344491 |
T |
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