View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11671_low_6 (Length: 482)
Name: NF11671_low_6
Description: NF11671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11671_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 38247396 - 38246922
Alignment:
| Q |
1 |
tttggctgaatccactatattgtttcatatggctatgctagaagtctgttctaccatgtaacaactgtgggaaggaaaaaattagtgaaagaagaagaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38247396 |
tttggctgaatccactatattgtttcatatggctatgctagaagtctgttctaccatgtaacaactgtgggaaggaaaaaattagtgaaagaagaagaac |
38247297 |
T |
|
| Q |
101 |
tggaggcattgtgaaagagtgcagcgaagaaactcccaaaaaaccataatagtaatgtaaacttgagagagaaatgtttagataagtaacactgtttccc |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38247296 |
tggaggcattgtgaaagagagcagcgaagaaactcccaaaaaaccataatagtaaagtaaacttgagagagaaatgtttagataagtaaccatgtttccc |
38247197 |
T |
|
| Q |
201 |
attgaatgtgaacgatgtgaaagagagcagcaaagaatatgaaatgctcttttaatttataacttatttgatcaacatactgcccatttgactgtgaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38247196 |
attgaatgtgaacgatgtgaaagagagcagcaaagagtatgaaatgctcttttaatttataacttatttgatcaacatactgcccatttgactgtgaaaa |
38247097 |
T |
|
| Q |
301 |
attggtttggaaaggctgaaaaaatggtaggtatttcgttcgcagtgcttacagaatatgtatgaatgaaatttttgacaatattcatttgcataaattt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
38247096 |
attggtttggaaaggctgaaaaaatggtaggtatttcgttcgcagtgcttacagaatatgtatgaatgaaattgttgacaatattcatttgcataaatct |
38246997 |
T |
|
| Q |
401 |
ggtcgttgggacttaatttggaacattaaagctccccccaagataaaaaatctcttgtggcgtgtgtctgtgctg |
475 |
Q |
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| T |
38246996 |
ggtcgttgggacttaatttggaacattaaatctccccccaagataaaaaatctcttgtggcgtgtgtctgggctg |
38246922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 320 - 436
Target Start/End: Original strand, 12223729 - 12223845
Alignment:
| Q |
320 |
aaaaatggtaggtatttcgttcgcagtgcttacagaatatgtatgaatgaaatttttgacaatattcatttgcataaatttggtcgttgggacttaattt |
419 |
Q |
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|||||||||||||||| ||| | |||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||| ||||||| |
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| T |
12223729 |
aaaaatggtaggtattctgtttgtagtgcttacaaaatatgtatgaatgaaattgttgacaatactcatttgcataaatcgggtcgttgggatttaattt |
12223828 |
T |
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| Q |
420 |
ggaacattaaagctccc |
436 |
Q |
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| T |
12223829 |
ggaacatgaaagctccc |
12223845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 340 - 467
Target Start/End: Original strand, 12225885 - 12226012
Alignment:
| Q |
340 |
tcgcagtgcttacagaatatgtatgaatgaaatttttgacaatattcatttgcataaatttggtcgttgggacttaatttggaacattaaagctcccccc |
439 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||| | | ||||||||| |||||||||||||| ||||||||||| |
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| T |
12225885 |
tcgcagtgcttacagaatatgtatgaacgaaattgttgacaatactcatttggataaactggatcgttgggatttaatttggaacatcaaagctccccct |
12225984 |
T |
|
| Q |
440 |
aagataaaaaatctcttgtggcgtgtgt |
467 |
Q |
| |
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||||| ||| |||||||||| |||||| |
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| T |
12225985 |
aagatcgaaattctcttgtggtgtgtgt |
12226012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 12223617 - 12223677
Alignment:
| Q |
238 |
tatgaaatgctcttttaatttataacttatttgatcaacatactgcccatttgactgtgaa |
298 |
Q |
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|||| ||||||| ||||||||||| ||||||||||||||||||| ||||||||| |||||| |
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| T |
12223617 |
tatggaatgctcctttaatttatatcttatttgatcaacatactacccatttgattgtgaa |
12223677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 320 - 450
Target Start/End: Complemental strand, 9171064 - 9170934
Alignment:
| Q |
320 |
aaaaatggtaggtatttcgttcgcagtgcttacagaatatgtatgaatgaaatttttgacaatattcatttgcataaatttggtcgttgggacttaattt |
419 |
Q |
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|||||||||| ||||| |||||| | |||||||| |||||||||||| |||||| ||||||||| ||| |||||||||| ||| ||||||| ||||||| |
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| T |
9171064 |
aaaaatggtatgtattccgttcgtaatgcttacataatatgtatgaaagaaattgttgacaatactcacttgcataaatcgggttgttgggatttaattt |
9170965 |
T |
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| Q |
420 |
ggaacattaaagctccccccaagataaaaaa |
450 |
Q |
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|||||||||||| | |||||||||||||||| |
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| T |
9170964 |
ggaacattaaagtttcccccaagataaaaaa |
9170934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 9171172 - 9171116
Alignment:
| Q |
242 |
aaatgctcttttaatttataacttatttgatcaacatactgcccatttgactgtgaa |
298 |
Q |
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|||||||| |||||||| ||||| |||||||||||||||| || ||||||||||||| |
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| T |
9171172 |
aaatgctcctttaatttctaactcatttgatcaacatactaccgatttgactgtgaa |
9171116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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