View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11671_low_7 (Length: 478)

Name: NF11671_low_7
Description: NF11671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11671_low_7
NF11671_low_7
[»] chr8 (3 HSPs)
chr8 (1-463)||(5040955-5041417)
chr8 (242-283)||(14229606-14229647)
chr8 (242-286)||(29198600-29198644)
[»] chr3 (2 HSPs)
chr3 (241-283)||(13635640-13635682)
chr3 (242-283)||(14782796-14782837)
[»] chr5 (2 HSPs)
chr5 (242-283)||(28136281-28136322)
chr5 (239-283)||(12478341-12478385)
[»] chr1 (1 HSPs)
chr1 (245-283)||(4785045-4785083)
[»] chr6 (1 HSPs)
chr6 (241-282)||(18263563-18263604)
[»] chr2 (1 HSPs)
chr2 (247-279)||(36036318-36036350)


Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 5040955 - 5041417
Alignment:
Q  1 atgatgaatttggttgttgaaaattaatattagttgaacaaggtcccttatcacatcttggtttcttgcattttggtggtttatcagtgataagtctaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5040955 atgatgaatttggttgttgaaaattaatattagttgaacaaggtcccttatcacatcttggtttcttgcattttggtggtttatcagtgataagtctaaa 5041054  T
Q  101 accaccttcaacaggtgaagaattatgaatagtacttgattgtattgcttttcttggatggatgtattgatctgaggaactttgagagattgtttcatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5041055 accaccttcaacaggtgaagaattatgaatagtacttgattgtattgcttttcttggatggatgtattgatctgaggaactttgagagattgtttcatca 5041154  T
Q  201 aattcattgagtggacactgaatgtttttgtttccagtaccctctgtagcactgacacttctgatcgaaggcgtgtctggtgtttgcgtccgtgtttgtg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| || || |||||||||    
T  5041155 aattcattgagtggacactgaatgtttttgtttccagtaccctctgtagcactgacacttttgatcgaagacgtgtctggtgttcgcatctgtgtttgtg 5041254  T
Q  301 tcagtgcttcgtagcttgtactgtttgaaacattactatcagtttcacctgaggaagttgctgtgttactgacataactgaagttccataagtttttgca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5041255 tcagtgcttcgtagcttgtactgtttgaaacattactatcagtttcacctgaggaggttgctgtgttactgacataactgaagttccataagtttttgca 5041354  T
Q  401 gtcagaaaatagctttgaaattccatcattatcattttcgacagaattgtctgtgttactgtt 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5041355 gtcagaaaatagctttgaaattccatcattatcattttcgacagaagtgtctgtgttactgtt 5041417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 14229647 - 14229606
Alignment:
Q  242 ctctgtagcactgacacttctgatcgaaggcgtgtctggtgt 283  Q
    |||| |||||||||||||||||||||||||| |||| |||||    
T  14229647 ctctatagcactgacacttctgatcgaaggcatgtccggtgt 14229606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 29198600 - 29198644
Alignment:
Q  242 ctctgtagcactgacacttctgatcgaaggcgtgtctggtgtttg 286  Q
    |||||||| || ||||| ||||||| |||||||||||||||||||    
T  29198600 ctctgtagaaccgacacctctgatctaaggcgtgtctggtgtttg 29198644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 13635682 - 13635640
Alignment:
Q  241 cctctgtagcactgacacttctgatcgaaggcgtgtctggtgt 283  Q
    |||| |||||||||||||||||||| |||||||||||||||||    
T  13635682 cctcagtagcactgacacttctgatagaaggcgtgtctggtgt 13635640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 14782796 - 14782837
Alignment:
Q  242 ctctgtagcactgacacttctgatcgaaggcgtgtctggtgt 283  Q
    ||||||||||| |||||||||||| ||| |||||||||||||    
T  14782796 ctctgtagcaccgacacttctgatggaaagcgtgtctggtgt 14782837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 28136322 - 28136281
Alignment:
Q  242 ctctgtagcactgacacttctgatcgaaggcgtgtctggtgt 283  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  28136322 ctctatagcactgacacttctgatcgaagacgtgtctggtgt 28136281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 12478385 - 12478341
Alignment:
Q  239 accctctgtagcactgacacttctgatcgaaggcgtgtctggtgt 283  Q
    ||||| |||||||| |||| ||||||| |||||||||||||||||    
T  12478385 accctttgtagcaccgacatttctgatggaaggcgtgtctggtgt 12478341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 4785083 - 4785045
Alignment:
Q  245 tgtagcactgacacttctgatcgaaggcgtgtctggtgt 283  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  4785083 tgtagcaccgacacttctgatcgaagacgtgtctggtgt 4785045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 18263604 - 18263563
Alignment:
Q  241 cctctgtagcactgacacttctgatcgaaggcgtgtctggtg 282  Q
    |||||||||||| ||||||||||||||||| |||||| ||||    
T  18263604 cctctgtagcaccgacacttctgatcgaagacgtgtcaggtg 18263563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 36036350 - 36036318
Alignment:
Q  247 tagcactgacacttctgatcgaaggcgtgtctg 279  Q
    |||||||||||||||||| ||||||||||||||    
T  36036350 tagcactgacacttctgaccgaaggcgtgtctg 36036318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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