View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11671_low_8 (Length: 453)
Name: NF11671_low_8
Description: NF11671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11671_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 49 - 436
Target Start/End: Original strand, 7108239 - 7108626
Alignment:
| Q |
49 |
taagaaatatgacaagattatactcacttttaaaactactcgataaagaggagaaaatatgataagaaatacatctatcgttttttaaaactctagacct |
148 |
Q |
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| T |
7108239 |
taagaaatatgacaagattatactcacttttaaaactactcgataaagaggagaaaatatgataagaaatacatctatcattttttaaaactctagacct |
7108338 |
T |
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| Q |
149 |
taacatctttgcccgatccgtatcagaagacgccattctctcaacaaagcttaagattataagcttcattaagatggattagatatctaatacctaaccc |
248 |
Q |
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| T |
7108339 |
taacatctttgcccaatccgtatcagaagacgccattctcccaacaaagcttaagattataagcttcattaagatggattagatatctaatacctaaccc |
7108438 |
T |
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| Q |
249 |
tccctcctctaatggcttacaaattttttccatgccacaatgactaatttcctcttctcaatgtccccactccaaatgaagttcctaatgcttctctcca |
348 |
Q |
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| T |
7108439 |
tccttcctctaatggcttacaaatttttttcatgccacaatgactaatttcctcttctcaatgtccccactccaaatgaagttcctaatgcttctctcca |
7108538 |
T |
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| Q |
349 |
aatcttttaacaatgaaaatggcaaaccatataagaacaaattgtgtatcagtattccttgaatcaatgagattactatggttttctg |
436 |
Q |
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| T |
7108539 |
aatcttttaacaatgaaaatagcaaagcatataaggacaaattgtgtatcagtattccttgaatcaatgagattactatggttttctg |
7108626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 7108025 - 7108062
Alignment:
| Q |
12 |
atggacatcatagcacctgataattcaacaaatatgat |
49 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
7108025 |
atggtcatcatagcacctgataattcaacaaatatgat |
7108062 |
T |
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