View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11671_low_9 (Length: 431)
Name: NF11671_low_9
Description: NF11671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11671_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 47816478 - 47816058
Alignment:
| Q |
1 |
aaaattactccaaagctaattattgaaacttcagcaaatatatggtcatttatccgcaagtcaaaagtgaaatactgcattgtgattcgatatacagttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47816478 |
aaaattactccaaagctaattattgaaacttcagcaaatatatggtcatttatccgcaagtcaaaagtgaaatactgcattgtgattcgatatacagttt |
47816379 |
T |
|
| Q |
101 |
gaaatcgttgtatagctgaattattaccgtactatgtaaaatgtcgcgtatccattttttatgtcaagaaaatattacctgtagttcacctctagcaata |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47816378 |
gaaatcattgtatagctgaattattaccgtactatgtaaaatgtcgcgtatccattttttatgtcaagaaaatattacctgtagttcacctctagcaata |
47816279 |
T |
|
| Q |
201 |
gctggtttcaatatgtttgtcgcatcaattaccccttcagctgctcctgctccaatgagagtgtgcacttcatcaatgaaaagtattatttcatcacttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47816278 |
gctggtttcaatatgtttgtcgcatcaattaccccttcagctgctcctgctccaatgagagtgtgcacttcatcaatgaaaagtattatttcatcacttt |
47816179 |
T |
|
| Q |
301 |
gtttgatttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagcaacaagtagacccatatctagggttataacctaaat |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47816178 |
gtttgatttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagcaacaagtagacccatatctagggttataacctaaat |
47816079 |
T |
|
| Q |
401 |
catgcagaatgaggctttcat |
421 |
Q |
| |
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||||||||||||||||||||| |
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| T |
47816078 |
catgcagaatgaggctttcat |
47816058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 9 - 421
Target Start/End: Complemental strand, 47380999 - 47380587
Alignment:
| Q |
9 |
tccaaagctaattattgaaacttcagcaaatatatggtcatttatccgcaagtcaaaagtgaaatactgcattgtgattcgatatacagtttgaaatcgt |
108 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
47380999 |
tccaaagctaattattgaaacatcagcaaatatatggtcattgatctgcaagtcaaaagtgaaatactgcattgtgatttgatatacagtttgaaatcat |
47380900 |
T |
|
| Q |
109 |
tgtatagctgaattattaccgtactatgtaaaatgtcgcgtatccattttttatgtcaagaaaatattacctgtagttcacctctagcaatagctggttt |
208 |
Q |
| |
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||||| ||||||||||| || ||||| |||||||| || ||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47380899 |
tgtattgctgaattatttccatactacgtaaaatgccgtgtatctattttttatatcaagaaaatattacctgtagttcacctctagcaagagctggttt |
47380800 |
T |
|
| Q |
209 |
caatatgtttgtcgcatcaattaccccttcagctgctcctgctccaatgagagtgtgcacttcatcaatgaaaagtattatttcatcactttgtttgatt |
308 |
Q |
| |
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||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47380799 |
caatatgtttgccgcatcaattgccccttcagctgctcctgctccaatgagagtgtgcacttcatcaatgaaaagtattatttcatcactttgtttaatt |
47380700 |
T |
|
| Q |
309 |
tcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagcaacaagtagacccatatctagggttataacctaaatcatgcaga |
408 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
47380699 |
tcctccattagttttttcaatctctcctcaaattctccacgatatttagttccagcaacaagtagacccatatccagggttataacctaaatcatgcaga |
47380600 |
T |
|
| Q |
409 |
atgaggctttcat |
421 |
Q |
| |
|
||||||||||||| |
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|
| T |
47380599 |
atgaggctttcat |
47380587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 176 - 397
Target Start/End: Complemental strand, 45112924 - 45112703
Alignment:
| Q |
176 |
tacctgtagttcacctctagcaatagctggtttcaatatgtttgtcgcatcaattaccccttcagctgctcctgctccaatgagagtgtgcacttcatca |
275 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| | |||||| | ||||||||| | ||||| ||||||||||||||||| || |||||||||||||| |
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|
| T |
45112924 |
tacctgtagttcacctcttgcaagagctggttttagtatgttagcagcatcaattgcaccttcggctgctcctgctccaattagtgtgtgcacttcatcg |
45112825 |
T |
|
| Q |
276 |
atgaaaagtattatttcatcactttgtttgatttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagcaacaagtagac |
375 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||| ||||| ||||| || || ||||||||||| || ||||| ||||| | ||| || ||||| | || |
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| T |
45112824 |
ataaaaagtattatatcatcactttgtttgatttcttccatcagtttcttcaacctctcctcaaactcaccacggtatttggttccggctacaagcaaac |
45112725 |
T |
|
| Q |
376 |
ccatatctagggttataaccta |
397 |
Q |
| |
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|||| ||||||||||||||||| |
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| T |
45112724 |
ccatgtctagggttataaccta |
45112703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 206 - 421
Target Start/End: Complemental strand, 17718012 - 17717798
Alignment:
| Q |
206 |
tttcaatatgtttgtcgcatcaattaccccttcagctgctcctgctccaatgagagtgtgcacttcatcaatgaaaagtattatttcatcactttgtttg |
305 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17718012 |
tttcaatatgtttgccgcatcaattaccccttcagctgctc-tgctccaatgagagtgtgcacttcatcaatgaaaagtattatttcatcactttgtttg |
17717914 |
T |
|
| Q |
306 |
atttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagcaacaagtagacccatatctagggttataacctaaatcatgc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17717913 |
atttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagcaacaagtagacccatatctagggttataacctaaatcatgc |
17717814 |
T |
|
| Q |
406 |
agaatgaggctttcat |
421 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
17717813 |
agaatgaggctttcat |
17717798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 166 - 420
Target Start/End: Complemental strand, 40243729 - 40243475
Alignment:
| Q |
166 |
aagaaaatattacctgtagttcacctctagcaatagctggtttcaatatgtttgtcgcatcaattaccccttcagctgctcctgctccaatgagagtgtg |
265 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||| |
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|
| T |
40243729 |
aagaaaacattacctgtagttcacctctagcaagagctggtttcaatatgtttgccgcatcaattgccccttcagctgctcctgctccaattagagtgtg |
40243630 |
T |
|
| Q |
266 |
cacttcatcaatgaaaagtattatttcatcactttgtttgatttcctccattagtttatttaatctctcctcaaattctccacgatatttagatccagca |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| || |||||||||||||| ||||||| |||||| |
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|
| T |
40243629 |
cacttcatcaatgaaaagtattatttcatcgctttgtttgatttcctccattagttttttcaatctttcttcaaattctccacggtatttagttccagct |
40243530 |
T |
|
| Q |
366 |
acaagtagacccatatctagggttataacctaaatcatgcagaatgaggctttca |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
40243529 |
acaagtagacccatatctagggttataacctgcatcatgcagaacaaggctttca |
40243475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 34055787 - 34055910
Alignment:
| Q |
11 |
caaagctaattattgaaacttcagcaaatatatggtcatttatccgcaagtcaaaagtgaaatactgcattgtgattcgatatacagtttgaaatcgttg |
110 |
Q |
| |
|
|||| ||||||||||||||||| ||| | ||||||||||| |||| |||||||||||||||||| || | ||||||| || ||| || | |||||||||| |
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|
| T |
34055787 |
caaaactaattattgaaacttctgcagagatatggtcattgatccacaagtcaaaagtgaaatattgtactgtgatttgaaatatagctcgaaatcgttg |
34055886 |
T |
|
| Q |
111 |
tatagctgaattattaccgtacta |
134 |
Q |
| |
|
||| |||||||||| | |||||| |
|
|
| T |
34055887 |
tattactgaattatttcagtacta |
34055910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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