View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11672_high_10 (Length: 406)

Name: NF11672_high_10
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11672_high_10
NF11672_high_10
[»] chr3 (10 HSPs)
chr3 (3-259)||(5578105-5578361)
chr3 (310-386)||(5578357-5578432)
chr3 (49-115)||(32077480-32077546)
chr3 (49-115)||(51646885-51646951)
chr3 (64-115)||(4737800-4737851)
chr3 (49-115)||(46835541-46835607)
chr3 (191-248)||(5559694-5559750)
chr3 (77-114)||(8508672-8508709)
chr3 (49-99)||(8507228-8507279)
chr3 (191-248)||(5551145-5551200)
[»] chr8 (3 HSPs)
chr8 (64-115)||(14836399-14836450)
chr8 (64-115)||(27229237-27229288)
chr8 (64-115)||(30850214-30850265)
[»] chr1 (3 HSPs)
chr1 (322-385)||(1632115-1632178)
chr1 (49-124)||(20602208-20602284)
chr1 (64-115)||(29308696-29308747)
[»] chr4 (6 HSPs)
chr4 (322-386)||(23637807-23637870)
chr4 (322-386)||(36001425-36001488)
chr4 (49-108)||(47965540-47965599)
chr4 (72-129)||(14866628-14866686)
chr4 (74-115)||(30179071-30179112)
chr4 (64-101)||(52525953-52525990)
[»] chr6 (2 HSPs)
chr6 (64-115)||(29279776-29279827)
chr6 (64-116)||(9852102-9852154)
[»] chr2 (4 HSPs)
chr2 (64-115)||(28296914-28296965)
chr2 (64-115)||(24538237-24538288)
chr2 (64-108)||(22142305-22142349)
chr2 (81-115)||(7828944-7828978)
[»] chr7 (2 HSPs)
chr7 (64-125)||(27965240-27965304)
chr7 (64-108)||(45824591-45824635)
[»] scaffold0596 (1 HSPs)
scaffold0596 (64-111)||(1695-1742)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 3 - 259
Target Start/End: Original strand, 5578105 - 5578361
Alignment:
Q  3 atgcatctaactgccataacaacttttttggctccaaactgttctggccaaaaccatctacattagggttggcacaaattgttaacaatgttattcatat 102  Q
    ||||||||||| |||| ||||  ||||||||||||||| |||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  5578105 atgcatctaacggccagaacagtttttttggctccaaattgttctagccaaaaccatcagaattagggttggcacaaattgttaacaatgttattcatat 5578204  T
Q  103 tagaaataagtatatatgatatgatataactagattattcaaaagatcgacttatatctctctcctttataatagaagtttactttgtagaaaatgaaaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5578205 tagaaataagtatatatgatatgatataactagattattcaaaagatcgacttatatctctctcctttataatagaagtttactttgtagaaaatgaaaa 5578304  T
Q  203 atacgcgtggcagatcattttgcttactatcatgaattgcttaaatagttggctttt 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5578305 atacgcgtggcagatcattttgcttactatcatgaattgcttaaatagttggctttt 5578361  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 310 - 386
Target Start/End: Original strand, 5578357 - 5578432
Alignment:
Q  310 cttttcgtgaagttttctaatttattaattgtatatcactttgaaattagtagaaataaaatcctcacattaccatg 386  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5578357 cttttcgttaagttttctaatttattaattgtatatcactttgaaattagtagaaataaaatcctcac-ttaccatg 5578432  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 32077480 - 32077546
Alignment:
Q  49 gccaaaaccatctacattagggttggcacaaattgttaacaatgttattcatattagaaataagtat 115  Q
    |||||||||||| | ||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  32077480 gccaaaaccatcaagattagggttggcataaattgttagcaatgttattcatattagaaataagtat 32077546  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 51646951 - 51646885
Alignment:
Q  49 gccaaaaccatctacattagggttggcacaaattgttaacaatgttattcatattagaaataagtat 115  Q
    ||||||| |||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51646951 gccaaaaacatcaagattagggttgacacaaattgttaacaatgttattcatattagaaataagtat 51646885  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 4737800 - 4737851
Alignment:
Q  64 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 115  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  4737800 attagggttggcacaatttgttagcaatgttattcatattagaaataagtat 4737851  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 46835541 - 46835607
Alignment:
Q  49 gccaaaaccatctacattagggttggcacaaattgttaacaatgttattcatattagaaataagtat 115  Q
    |||||||||||| | |||||||||| ||||| ||||||| | |||||||||||||||||||||||||    
T  46835541 gccaaaaccatcaagattagggttgacacaatttgttaatattgttattcatattagaaataagtat 46835607  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 5559694 - 5559750
Alignment:
Q  191 agaaaatgaaaaatacgcgtggcagatcattttgcttactatcatgaattgcttaaat 248  Q
    |||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||    
T  5559694 agaaaatgaaaaatacgcgtggcaggacattt-gcttactatcatgaattgcttaaat 5559750  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 8508672 - 8508709
Alignment:
Q  77 caaattgttaacaatgttattcatattagaaataagta 114  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8508672 caaattgttaacaatgttattcatattagaaataagta 8508709  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 8507228 - 8507279
Alignment:
Q  49 gccaaaaccatctacatta-gggttggcacaaattgttaacaatgttattca 99  Q
    |||||||||||| | |||| |||||||||||||||||||||||| |||||||    
T  8507228 gccaaaaccatcaagattaagggttggcacaaattgttaacaatattattca 8507279  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 5551145 - 5551200
Alignment:
Q  191 agaaaatgaaaaatacgcgtggcagatcattttgcttactatcatgaattgcttaaat 248  Q
    ||||||||||| |||||||||| ||| ||||| ||||||||||||||||| |||||||    
T  5551145 agaaaatgaaatatacgcgtggtaga-cattt-gcttactatcatgaatttcttaaat 5551200  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 14836450 - 14836399
Alignment:
Q  64 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14836450 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 14836399  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 27229288 - 27229237
Alignment:
Q  64 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 115  Q
    |||||||||| | |||||| ||||||||| ||||||||||||||||||||||    
T  27229288 attagggttgacgcaaattattaacaatgctattcatattagaaataagtat 27229237  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 30850214 - 30850265
Alignment:
Q  64 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 115  Q
    |||||||||||||||| || ||| || |||||||||||||||||||||||||    
T  30850214 attagggttggcacaattttttagcagtgttattcatattagaaataagtat 30850265  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 322 - 385
Target Start/End: Original strand, 1632115 - 1632178
Alignment:
Q  322 ttttctaatttattaattgtatatcactttgaaattagtagaaataaaatcctcacattaccat 385  Q
    |||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||    
T  1632115 ttttctaatttattaattgtatatcattttaaaattagtagaaacaaaatcctcacattaccat 1632178  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 20602284 - 20602208
Alignment:
Q  49 gccaaaaccatctacattagggttggcacaaattgttaacaatgttattcatattagaaataagtat-atatgatat 124  Q
    |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||    
T  20602284 gccaaaaccatcaagatgagggttggcacaaattgttaacaatgttattcatattagaattaaatatgatatgatat 20602208  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 29308747 - 29308696
Alignment:
Q  64 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 115  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||||||||    
T  29308747 attaaggttgacacaatttgttaacaatgttattcatattagaaataagtat 29308696  T

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Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 23637807 - 23637870
Alignment:
Q  322 ttttctaatttattaattgtatatcactttgaaattagtagaaataaaatcctcacattaccatg 386  Q
    |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  23637807 ttttctaatttattaattgtatatcg-tttgaaattagtagaaacaaaatcctcacattaccatg 23637870  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 36001425 - 36001488
Alignment:
Q  322 ttttctaatttattaattgtatatcactttgaaattagtagaaataaaatcctcacattaccatg 386  Q
    |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  36001425 ttttctaatttattaattgtatatcg-tttgaaattagtagaaacaaaatcctcacattaccatg 36001488  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 47965540 - 47965599
Alignment:
Q  49 gccaaaaccatctacattagggttggcacaaattgttaacaatgttattcatattagaaa 108  Q
    ||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||||    
T  47965540 gccaaaaccatcaggattagggttggcacaaattgttagcaatgttattcatattagaaa 47965599  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 14866628 - 14866686
Alignment:
Q  72 tggcacaaattgttaacaatgttattcatattagaaataagtat-atatgatatgatat 129  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  14866628 tggcacaatttgttaacattgttattcatattagaaataagtatgatatgatatgatat 14866686  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 30179071 - 30179112
Alignment:
Q  74 gcacaaattgttaacaatgttattcatattagaaataagtat 115  Q
    |||||| |||||| ||||||||||||||||||||||||||||    
T  30179071 gcacaatttgttagcaatgttattcatattagaaataagtat 30179112  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 52525953 - 52525990
Alignment:
Q  64 attagggttggcacaaattgttaacaatgttattcata 101  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  52525953 attagggttgacacaaattgttagcaatgttattcata 52525990  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 29279827 - 29279776
Alignment:
Q  64 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 115  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  29279827 attagggttggcacaatttgttaacaatgctattcatattagaaataagtat 29279776  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 9852154 - 9852102
Alignment:
Q  64 attagggttggcacaaattgttaacaatgttattcatattagaaataagtata 116  Q
    |||||||||||||||| || ||| || ||||||||||||||||||||||||||    
T  9852154 attagggttggcacaattttttagcagtgttattcatattagaaataagtata 9852102  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 28296914 - 28296965
Alignment:
Q  64 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 115  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  28296914 attagggttggcacaatttgttaacaatgctattcatattagaaataagtat 28296965  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 24538288 - 24538237
Alignment:
Q  64 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 115  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||||||||||    
T  24538288 attagggttgacacaatttgttaacattgttattcatattagaaataagtat 24538237  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 22142305 - 22142349
Alignment:
Q  64 attagggttggcacaaattgttaacaatgttattcatattagaaa 108  Q
    |||||||||||||||| |||||||||||| |||||||||||||||    
T  22142305 attagggttggcacaatttgttaacaatgctattcatattagaaa 22142349  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 115
Target Start/End: Original strand, 7828944 - 7828978
Alignment:
Q  81 ttgttaacaatgttattcatattagaaataagtat 115  Q
    ||||||||| |||||||||||||||||||||||||    
T  7828944 ttgttaacattgttattcatattagaaataagtat 7828978  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 27965240 - 27965304
Alignment:
Q  64 attagggttggcacaaattgttaacaatgttatt--catattagaaataagtat-atatgatatg 125  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||||    
T  27965240 attagggttggcacaaattgttaacaatgttatttatatattagaaataagtatgatatgatatg 27965304  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 45824635 - 45824591
Alignment:
Q  64 attagggttggcacaaattgttaacaatgttattcatattagaaa 108  Q
    ||||||||||||||||||||||| ||||| ||||  |||||||||    
T  45824635 attagggttggcacaaattgttagcaatgctattgctattagaaa 45824591  T

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Target: scaffold0596 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 1695 - 1742
Alignment:
Q  64 attagggttggcacaaattgttaacaatgttattcatattagaaataa 111  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  1695 attagggttggcacaaaatgttaacattgttattcatattagaaataa 1742  T

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