View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11672_high_12 (Length: 348)
Name: NF11672_high_12
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11672_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 37253713 - 37253789
Alignment:
| Q |
14 |
agacctgggctgtccacagcagaccctgcaggaacaaacagaagctgctaacaacaccccccagcctacacagcaca |
90 |
Q |
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| T |
37253713 |
agacctgggctgtccacagcagaccctgcaggagcaaacagaagctgctaacagcacccaccaacctatacagcaca |
37253789 |
T |
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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 199 - 323
Target Start/End: Complemental strand, 7585827 - 7585702
Alignment:
| Q |
199 |
agtttgttcactttcaccgccttcttttgagattcattgtt-acgcctatcatgatttccattacctgtataaccaaaa-taccttcatttccattatca |
296 |
Q |
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| T |
7585827 |
agtttgtt-actgtcactgccttctttggagattcattgttcatgcttgtcacaatttcccttacctgtataaccaaaaatacattcatttccattatca |
7585729 |
T |
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| Q |
297 |
aatcttactatacatctacacgatact |
323 |
Q |
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| T |
7585728 |
aatcttacaatacatctacaagatact |
7585702 |
T |
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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 45091457 - 45091381
Alignment:
| Q |
14 |
agacctgggctgtccacagcagaccctgcaggaacaaacagaagctgctaacaacaccccccagcctacacagcaca |
90 |
Q |
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| T |
45091457 |
agacctgggctgtccacagcagaccctgcaggagcaaacagaagctgctaacagcatccaccaacctatacagcaca |
45091381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 11073238 - 11073311
Alignment:
| Q |
14 |
agacctgggctgtccacagcagaccctgcaggaacaaacagaagctgctaacaacaccccccagcctacacagcaca |
90 |
Q |
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| T |
11073238 |
agacctgggctgtccacaa---accctgcaggagcaaacagaagctgctaacagcacccaccaacctatacagcaca |
11073311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 17979653 - 17979723
Alignment:
| Q |
210 |
tttcaccgccttcttttgagattcattgtt-acgcctatcatgatttccattacctgtataaccaaaatac |
279 |
Q |
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| T |
17979653 |
tttcactgccttctttggagattccttgttcatgcgtgtgatgatttcccttacctgtataaccaaaatac |
17979723 |
T |
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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 30479647 - 30479697
Alignment:
| Q |
264 |
tgtataaccaaaataccttcatttccattatcaaatcttactatacatcta |
314 |
Q |
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| T |
30479647 |
tgtatgaccaaaatacattcaattcctttatcaaatcttaccatacatcta |
30479697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 294
Target Start/End: Complemental strand, 29708628 - 29708539
Alignment:
| Q |
206 |
tcactttcaccgccttcttttgagattcattgtt-acgcctatcatgatttccattacctgtataaccaaaataccttcatttccattat |
294 |
Q |
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| T |
29708628 |
tcactttcacagccttctttggagattcattgttcattcctttcatgaattcacttacctgtatgagcaaaatacattcaattcctttat |
29708539 |
T |
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