View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11672_high_24 (Length: 250)

Name: NF11672_high_24
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11672_high_24
NF11672_high_24
[»] chr1 (3 HSPs)
chr1 (1-236)||(48475766-48476001)
chr1 (52-133)||(17304481-17304562)
chr1 (52-133)||(34588178-34588259)
[»] chr7 (1 HSPs)
chr7 (1-205)||(27857146-27857344)
[»] chr6 (1 HSPs)
chr6 (1-133)||(29092120-29092255)
[»] chr4 (2 HSPs)
chr4 (1-133)||(47997273-47997408)
chr4 (1-133)||(48813519-48813654)
[»] chr3 (3 HSPs)
chr3 (1-133)||(5937499-5937634)
chr3 (1-133)||(13857813-13857948)
chr3 (1-133)||(5931801-5931936)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 48476001 - 48475766
Alignment:
Q  1 cttcagtttaaaggataaagatgtacaatcattatttagttactctcagcacatacttgcataagttaatagtatcaagatccttccaagtaaaattatt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48476001 cttcagtttaaagtataaagatgtacaatcattatttagttactctcagcacatacttgcataagttaatagtatcaagatccttccaagtaaaattatt 48475902  T
Q  101 ataatggtaacacaaaataaagctaaatatttaaaatgaaatagcagacatcttctttctttcaacaagtggcaaataactttaaccttgaagtcctagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  48475901 ataatggtaacacaaaataaagctaaatatttaaaatgaaatagcagacatcttctttctttcaacaagtggctaataactttaaccttgaagttctagt 48475802  T
Q  201 tgatccttgtctatatgaatattgttgagcattcat 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  48475801 tgatccttgtctatatgaatattgttgagcattcat 48475766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 17304562 - 17304481
Alignment:
Q  52 catacttgcataagttaatagtatcaagatccttccaagtaaaattattataatggtaacacaaaataaagctaaatattta 133  Q
    |||||||||||||||||||||  |||| ||||||||||  |||| ||||| |||   || ||||||||||||||||| ||||    
T  17304562 catacttgcataagttaatagagtcaacatccttccaaagaaaactattacaataacaagacaaaataaagctaaatgttta 17304481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 34588259 - 34588178
Alignment:
Q  52 catacttgcataagttaatagtatcaagatccttccaagtaaaattattataatggtaacacaaaataaagctaaatattta 133  Q
    |||||||||||||||||||||  |||| ||||||||||  |||| ||||| |||   || ||||||||||||||||| ||||    
T  34588259 catacttgcataagttaatagagtcaacatccttccaaagaaaactattacaataacaaaacaaaataaagctaaatgttta 34588178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 27857146 - 27857344
Alignment:
Q  1 cttcagtttaaaggataaagatgtacaatcattatttagttactctcagca---catacttgcataagttaatagtatcaagatccttccaagtaaaatt 97  Q
    ||||||||| ||| ||||||||| ||||| |||  |||||||||||||  |   |||||||||||||||||||||  |||| ||||||||||  |||| |    
T  27857146 cttcagtttgaagtataaagatgcacaataattccttagttactctcaatagatcatacttgcataagttaatagagtcaacatccttccaaagaaaact 27857245  T
Q  98 attataatggtaacacaaaataaagctaaatatttaaaatgaaatagcagacatcttctttctttcaacaagtggcaaataactttaaccttgaagtcct 197  Q
    |||| ||||| || ||||||||||||||||| ||||      |||||||||||||    |||| ||||||||| || |||||||| ||| |||||||||     
T  27857246 attacaatggcaaaacaaaataaagctaaatgttta-----taatagcagacatc----ttctctcaacaagtagctaataacttcaactttgaagtcca 27857336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 29092255 - 29092120
Alignment:
Q  1 cttcagtttaaaggataaagatgtacaatcattatttagttactctcagca---catacttgcataagttaatagtatcaagatccttccaagtaaaatt 97  Q
    ||||||||| ||| ||||||||| |||||  ||  |||||||||||||  |   |||||||||||||||||||||  |||| ||||||||||  |||| |    
T  29092255 cttcagtttgaagtataaagatgcacaatagttccttagttactctcaatacatcatacttgcataagttaatagagtcaacatccttccaaagaaaact 29092156  T
Q  98 attataatggtaacacaaaataaagctaaatattta 133  Q
    |||| ||||| || ||||||||||||||||| ||||    
T  29092155 attacaatggcaaaacaaaataaagctaaatgttta 29092120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 47997273 - 47997408
Alignment:
Q  1 cttcagtttaaaggataaagatgtacaatcattatttagttactctcagca---catacttgcataagttaatagtatcaagatccttccaagtaaaatt 97  Q
    ||||||||| ||| ||||||||| |||||||||  |||||||||||||  |   |||||||||||||||||||||  |||| |||||| ||| ||||| |    
T  47997273 cttcagtttgaagtataaagatgcacaatcattccttagttactctcaatacatcatacttgcataagttaatagggtcaacatcctttcaaataaaact 47997372  T
Q  98 attataatggtaacacaaaataaagctaaatattta 133  Q
    |||| |||||  | ||||||||||| ||||| ||||    
T  47997373 attacaatggctaaacaaaataaagttaaatgttta 47997408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 48813654 - 48813519
Alignment:
Q  1 cttcagtttaaaggataaagatgtacaatcattatttagttactctcagcacat---acttgcataagttaatagtatcaagatccttccaagtaaaatt 97  Q
    ||||||||| ||| ||||||||| |||||||||  ||| |||||||||  ||||   |||||||||||| |||||  |||| |||||||||| ||||| |    
T  48813654 cttcagtttgaagtataaagatgcacaatcattccttacttactctcaatacatcatacttgcataagtaaatagggtcaacatccttccaaataaaact 48813555  T
Q  98 attataatggtaacacaaaataaagctaaatattta 133  Q
    |||| ||| | || ||||||||||||||||| ||||    
T  48813554 attacaatagcaaaacaaaataaagctaaatgttta 48813519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 5937634 - 5937499
Alignment:
Q  1 cttcagtttaaaggataaagatgtacaatcattatttagttactctcagca---catacttgcataagttaatagtatcaagatccttccaagtaaaatt 97  Q
    ||||||||| ||| ||||| ||| ||||| |||  |||||||||||||  |   |||||||||||||||||||||  |||| ||||||||||  |||| |    
T  5937634 cttcagtttgaagcataaaaatgcacaataattccttagttactctcaatacatcatacttgcataagttaatagagtcaacatccttccaaagaaaact 5937535  T
Q  98 attataatggtaacacaaaataaagctaaatattta 133  Q
    |||| ||||| || ||||||||||||||||| ||||    
T  5937534 attacaatggcaaaacaaaataaagctaaatgttta 5937499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 13857813 - 13857948
Alignment:
Q  1 cttcagtttaaaggataaagatgtacaatcattatttagttactctcagca---catacttgcataagttaatagtatcaagatccttccaagtaaaatt 97  Q
    ||||||||| ||| ||||||||| ||||| |||  |||||||||||||  |   |||||||||||||||||||||  |||| ||||||||||  |||| |    
T  13857813 cttcagtttgaagcataaagatgcacaataattccttagttactctcaatacatcatacttgcataagttaatagagtcaacatccttccaaagaaaact 13857912  T
Q  98 attataatggtaacacaaaataaagctaaatattta 133  Q
    |||| ||||  || ||||||||||||||||| ||||    
T  13857913 attacaatgacaaaacaaaataaagctaaatgttta 13857948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 5931801 - 5931936
Alignment:
Q  1 cttcagtttaaaggataaagatgtacaatcattatttagttactctcagca---catacttgcataagttaatagtatcaagatccttccaagtaaaatt 97  Q
    ||||||||| ||| |||||||||  |||| |||  |||||||||||||  |   |||||||| ||||||||||||  |||| ||||||||||  |||| |    
T  5931801 cttcagtttgaagcataaagatgcccaataattccttagttactctcaatacatcatacttggataagttaatagagtcaacatccttccaaagaaaact 5931900  T
Q  98 attataatggtaacacaaaataaagctaaatattta 133  Q
    |||| ||||| || ||||||||||||||||| ||||    
T  5931901 attacaatggcaaaacaaaataaagctaaatgttta 5931936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University