View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11672_high_29 (Length: 241)
Name: NF11672_high_29
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11672_high_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 2159113 - 2159337
Alignment:
| Q |
1 |
atgttgtaccgtatgatattgatttatcaaaaccttgcacaattatgaaatttctacatttgaattagaaaggtacctctaaagtaacgtgacctcaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2159113 |
atgttgtaccgtatgatattgatttatcaaaaccttgcacaattatgaaatttctacattcgaattggaaaggtacctctaaagtaacgtgacctcaaat |
2159212 |
T |
|
| Q |
101 |
ccaaaacaccacattcagtgtactttattcataaatgatgtttctacttagataaacaaaatcgtagttggtctagataggagaagaaaacaaaattatg |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2159213 |
ccaaaacaccacattcggtgtactttattcataaatgatgtttctacttagataaacaaaatcgtagttggtctatataggagaagaaaacaaaattatg |
2159312 |
T |
|
| Q |
201 |
aatgcttattgtacaccatgcattt |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2159313 |
aatgcttattgtacaccatgcattt |
2159337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University