View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11672_high_32 (Length: 240)

Name: NF11672_high_32
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11672_high_32
NF11672_high_32
[»] chr7 (9 HSPs)
chr7 (2-223)||(29106287-29106517)
chr7 (1-223)||(29074551-29074764)
chr7 (2-59)||(29894951-29895008)
chr7 (2-59)||(29898847-29898904)
chr7 (2-58)||(29873968-29874024)
chr7 (14-58)||(29884760-29884804)
chr7 (105-223)||(29898959-29899077)
chr7 (6-51)||(29858913-29858958)
chr7 (12-43)||(29431567-29431598)
[»] chr4 (4 HSPs)
chr4 (1-109)||(11849144-11849252)
chr4 (3-58)||(3565236-3565291)
chr4 (6-58)||(3557221-3557273)
chr4 (6-42)||(3561509-3561545)
[»] chr1 (3 HSPs)
chr1 (3-58)||(39379590-39379645)
chr1 (2-47)||(4367038-4367083)
chr1 (2-34)||(17561318-17561350)
[»] chr3 (1 HSPs)
chr3 (2-58)||(3625249-3625305)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 29106287 - 29106517
Alignment:
Q  2 agagtactggctccgtttatggaacccagccaccaggacaacatctccaaaatttggcaaatttggagaa---------actctccggtctgatggaatg 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||         ||| |  || || ||||||||    
T  29106287 agagtactggctccgtttatggaacccagccaccaggacaacatctccaaaatttggccaatttggcgaatttggaaaaactatggggcctcatggaatg 29106386  T
Q  93 ttcaattttaagtttggttgtgacgattcaagcggcacttacaaggttgtggctttccgttacaatcatattcaactgagaagtgtcgtgaaaattatca 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29106387 ttcaattttaagtttggttgtgacgattcaagcggcacttacaaggttgtggcttaccgttacaatcatattcaactgagaagtgtcgtgaaaattatca 29106486  T
Q  193 gttttggtgataatgtttggagagatgttga 223  Q
    |||||||||||||||||||||||||||||||    
T  29106487 gttttggtgataatgtttggagagatgttga 29106517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29074551 - 29074764
Alignment:
Q  1 cagagtactggctccgtttatggaacccagccaccaggacaacatctccaaaatttggcaaatttggagaaactctccggtctgatggaatgttcaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||| ||    
T  29074551 cagagtactggctccgtttatggaacccagccaccaggacaacatctccaaaatttggcaaa---------actctccggtctgatggaatgttcaactt 29074641  T
Q  101 taagtttggttgtgacgattcaagcggcacttacaaggttgtggctttccgttacaatcatattcaactgagaagtgtcgtgaaaattatcagttttggt 200  Q
    ||||||||||||||||||||||||||||||||  ||||||| ||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  29074642 taagtttggttgtgacgattcaagcggcacttgtaaggttgcggcattccgttataatcatattcaactgagaagtgtagtgaaaattatcagttttggt 29074741  T
Q  201 gataatgtttggagagatgttga 223  Q
    |||||||||||||||||||||||    
T  29074742 gataatgtttggagagatgttga 29074764  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 29894951 - 29895008
Alignment:
Q  2 agagtactggctccgtttatggaacccagccaccaggacaacatctccaaaatttggc 59  Q
    |||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||    
T  29894951 agagtactggtttcgtttatcgaacccagccaccaggacaacatctccaaaatttggc 29895008  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 29898847 - 29898904
Alignment:
Q  2 agagtactggctccgtttatggaacccagccaccaggacaacatctccaaaatttggc 59  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29898847 agagtactatctccgtttatggaacccagccaccaggacaacatctcaaaaatttggc 29898904  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 29873968 - 29874024
Alignment:
Q  2 agagtactggctccgtttatggaacccagccaccaggacaacatctccaaaatttgg 58  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||||||| ||||||    
T  29873968 agagtactggctttgtttatggaacccagccaccaggataacatctccaatatttgg 29874024  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 29884760 - 29884804
Alignment:
Q  14 ccgtttatggaacccagccaccaggacaacatctccaaaatttgg 58  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  29884760 ccgtttatggaacccagccaccaggacaacatcttcaaaatttgg 29884804  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 223
Target Start/End: Original strand, 29898959 - 29899077
Alignment:
Q  105 tttggttgtgacgattcaagcggcacttacaaggttgtggctttccgttacaatcatattcaactgagaagtgtcgtgaaaattatcagttttggtgata 204  Q
    ||||||| |||| |||||| | | ||||| ||||| ||||| | |||||||||||   ||| | |||||||    ||||||||| |||||||||||||||    
T  29898959 tttggttttgacaattcaaacagaacttataaggtggtggcataccgttacaatccagttcgattgagaagcaatgtgaaaattctcagttttggtgata 29899058  T
Q  205 atgtttggagagatgttga 223  Q
    |||||||||||||| ||||    
T  29899059 atgtttggagagatattga 29899077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 29858913 - 29858958
Alignment:
Q  6 tactggctccgtttatggaacccagccaccaggacaacatctccaa 51  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||    
T  29858913 tactggttccgtttatggaacccagccacaaggacaacatctccaa 29858958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 43
Target Start/End: Complemental strand, 29431598 - 29431567
Alignment:
Q  12 ctccgtttatggaacccagccaccaggacaac 43  Q
    ||||||||||||||||||||||||||||||||    
T  29431598 ctccgtttatggaacccagccaccaggacaac 29431567  T

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Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 11849252 - 11849144
Alignment:
Q  1 cagagtactggctccgtttatggaacccagccaccaggacaacatctccaaaatttggcaaatttggagaaactctccggtctgatggaatgttcaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  11849252 cagagtactggctccgtttatggaacccagccaccaggacaacatctccaaaatttggcgaatttggagaaactctccggtctgatggaatgttcaactt 11849153  T
Q  101 taagtttgg 109  Q
    |||||||||    
T  11849152 taagtttgg 11849144  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 3565236 - 3565291
Alignment:
Q  3 gagtactggctccgtttatggaacccagccaccaggacaacatctccaaaatttgg 58  Q
    ||||||||||||||||||||||||||||| || |||| || |||||||||| ||||    
T  3565236 gagtactggctccgtttatggaacccagctactaggaaaatatctccaaaaattgg 3565291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 3557221 - 3557273
Alignment:
Q  6 tactggctccgtttatggaacccagccaccaggacaacatctccaaaatttgg 58  Q
    |||||||| |||||||||||||||||||| |||| || |||||||||| ||||    
T  3557221 tactggctacgtttatggaacccagccactaggaaaatatctccaaaaattgg 3557273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 3561545 - 3561509
Alignment:
Q  6 tactggctccgtttatggaacccagccaccaggacaa 42  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3561545 tactggctccgtttatggaacccagccactaggacaa 3561509  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 39379645 - 39379590
Alignment:
Q  3 gagtactggctccgtttatggaacccagccaccaggacaacatctccaaaatttgg 58  Q
    ||||||||| |||||||||||||||||||||| |||| |||||||| |||| ||||    
T  39379645 gagtactggttccgtttatggaacccagccactaggaaaacatctcaaaaaattgg 39379590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 4367083 - 4367038
Alignment:
Q  2 agagtactggctccgtttatggaacccagccaccaggacaacatct 47  Q
    |||||||||| | ||||||||||||||||| |||||||||||||||    
T  4367083 agagtactggtttcgtttatggaacccagcaaccaggacaacatct 4367038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 17561350 - 17561318
Alignment:
Q  2 agagtactggctccgtttatggaacccagccac 34  Q
    |||||||||||||||||||||||||||||||||    
T  17561350 agagtactggctccgtttatggaacccagccac 17561318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 3625249 - 3625305
Alignment:
Q  2 agagtactggctccgtttatggaacccagccaccaggacaacatctccaaaatttgg 58  Q
    ||||||||||||||| ||||||||||||||||| || || ||||||| ||| |||||    
T  3625249 agagtactggctccgcttatggaacccagccacgagaacgacatctcaaaattttgg 3625305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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