View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11672_high_33 (Length: 239)
Name: NF11672_high_33
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11672_high_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 48475988 - 48476207
Alignment:
| Q |
1 |
actttaaactgaagttcattttattgttacttaaa-cagtaagctcttgtgacttatacactctaatgttgatgccaagatatacttctattgcaaattt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48475988 |
actttaaactgaagttcattttattgttacttaaagcagtaagctcttgtgacttatacactctaatgttgatgccaagatatacttctattgcaaattt |
48476087 |
T |
|
| Q |
100 |
ttaaaatttttatccagttcattcaaactgaaacaaaaggaatattacactgtgaagtatagaaaagaaagnnnnnnnnnngtgggggttccccaaccaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48476088 |
ttaaaatttttatccagttcattcaaactgaaacaaaaggaatattacactgtggagtatagaaaagaaa----aaaaaaagtgggggttccccaaccaa |
48476183 |
T |
|
| Q |
200 |
gtctatgaaactaacaagggtttc |
223 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
48476184 |
gtctatgaaactaacaagggtttc |
48476207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 218
Target Start/End: Original strand, 40963423 - 40963453
Alignment:
| Q |
188 |
ttccccaaccaagtctatgaaactaacaagg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
40963423 |
ttccccaaccaagtctatgaaactaacaagg |
40963453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 48813641 - 48813713
Alignment:
| Q |
1 |
actttaaactgaagttcattttattgttacttaaacagtaagctcttgtgacttatacactctaatgttgatg |
73 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| | ||||||||||||| |||| |||| ||||||||| |
|
|
| T |
48813641 |
acttcaaactgaagttgattttattgttacttaaggattaagctcttgtgaattatgtgctcttatgttgatg |
48813713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 40142801 - 40142873
Alignment:
| Q |
1 |
actttaaactgaagttcattttattgttacttaaacagtaagctcttgtgacttatacactctaatgttgatg |
73 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| | ||||||||| ||| |||| |||| ||||||||| |
|
|
| T |
40142801 |
acttcaaactgaagttgattttattgttacttaaggattaagctcttatgatttatgtgctcttatgttgatg |
40142873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 47997286 - 47997214
Alignment:
| Q |
1 |
actttaaactgaagttcattttattgttacttaaacagtaagctcttgtgacttatacactctaatgttgatg |
73 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| | ||| ||||||||| |||| |||| ||||||||| |
|
|
| T |
47997286 |
acttcaaactgaagttgattttattgttacttaaggattaaactcttgtgaattatgtgctcttatgttgatg |
47997214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University