View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11672_high_4 (Length: 544)
Name: NF11672_high_4
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11672_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 50897634 - 50898048
Alignment:
| Q |
1 |
agaccataggaactctatttagattgtgcagcggatagtgtgtagagaaaattagagaattacatatttaatattaaaacacttaactaaatagttgtgt |
100 |
Q |
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| T |
50897634 |
agaccataggaactctatttagattgtgcagctgatagtgtgtagagaaaattagagaattacatatttaatcttaaaacacttaactaaatagttgtgt |
50897733 |
T |
|
| Q |
101 |
atatccacggtagccttcgaacattcgttaaggtcactgtaacaggccaatcaatggtggtagcttaactcctagtctcctctaatgagattgagcagcc |
200 |
Q |
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| T |
50897734 |
atatccacggtagccttcgaacattcgttaaggtcactgtagcaggccaatcaatggtggtagcttaactcctagtctcctctaatgagattgagcagcc |
50897833 |
T |
|
| Q |
201 |
accgaacaaaattgaagatgttggaagttttatatccaaaagttattcattgtttgtgcaaccaaggtgaataagccaagaatttgagttctaaggtgaa |
300 |
Q |
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| T |
50897834 |
acctaacaaaattgaagatgttggaagttttatatccaaaagttattcattgtttgtgcaaccaaggtgaataagccaagaatttgagttctaaggtgaa |
50897933 |
T |
|
| Q |
301 |
taaatgaggaatttaagttcgaatactaacccttgtagtatgtagacgtaatacaatgttcttgtcggttgaactatgtttacatgactctattgattat |
400 |
Q |
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| T |
50897934 |
taaatgaggaatttaagttcgaatactaacccttgtagtatgtagacgtaatacaatgttcttgtcggttgaactatgtttacatgactctattgattat |
50898033 |
T |
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| Q |
401 |
gttatgtttacatga |
415 |
Q |
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| T |
50898034 |
gttatgtttacatga |
50898048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 488 - 525
Target Start/End: Original strand, 50898121 - 50898158
Alignment:
| Q |
488 |
gataatgttaagtgatgaatcatactttaacaacctcg |
525 |
Q |
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| T |
50898121 |
gataatgttaagtgatgaatcatactttaacaacctcg |
50898158 |
T |
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