View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11672_low_1 (Length: 740)
Name: NF11672_low_1
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11672_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 575; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 90 - 722
Target Start/End: Complemental strand, 32763882 - 32763253
Alignment:
| Q |
90 |
gcaggttgtgttacaatttgatttcacaaatgctaaatgctaatgcattatcttgttctcttgttaattgtgtttcgttgactatttatcagactgaaat |
189 |
Q |
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| T |
32763882 |
gcaggttgtgttacaatttgatttcacaaatgctaaatgctaatgcattatcttgttctcttgttaattgtgtttcgttgactatttatcagactgaaat |
32763783 |
T |
|
| Q |
190 |
gcaattgtttgacttgttaatattatgattttaggcatttataattctataaggctaatgcataatgtttgttacaattgttagtttttcacatacnnnn |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32763782 |
gcaattgtttgacttgttaatattatgattttaggcatttataattctataaggctaatgcataatgtttgttacaattgttagtttttcacatactttt |
32763683 |
T |
|
| Q |
290 |
nnnnnnnattgcaggttggtggaaaatcaatgaagagccttgacttagatatcttgaatttaggttcttgactttgatattttgtaaatggaacttaggc |
389 |
Q |
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| T |
32763682 |
tttt---attgcaggttggtggaaaattaatgaagagccttgacttagatattttgaatttaggttcttgactttgatattttgtaaatggaacttaggc |
32763586 |
T |
|
| Q |
390 |
tcttggtgtgcctaacttatgattttgatgcatttaggctcttgaaccttgttattttgtgagctgtgactttagttaatttaggaccttgtactttggt |
489 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32763585 |
tcttggtgagcctaacttatgattttgatgcatttaggctcttgaaccttgttattttgtgagctgtgactttagttaatttaggaccttgtactttggt |
32763486 |
T |
|
| Q |
490 |
tatttcttttttatgcttgcaagcattttaagcaattttaagccctgaaactttggttattttgatgcttgcaaagttatttgcaagtattttatgattt |
589 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32763485 |
tatttcttttttatgcttgcaagcattttatgcaattttaagccctgaaactttggttattttgatgcttgcaaagttatttgcaagtattttatgattt |
32763386 |
T |
|
| Q |
590 |
tgatattctcattaatgttatgtttatgtatttgattttaacaaatatagtaagataagttacactatctattagggactcagcgaccggcttacattct |
689 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32763385 |
tgatattctcatttatgttatgtttatgtatttgattttaacaaatatagtaagataagttacactatctattagggactcagcgaccggcttacattct |
32763286 |
T |
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| Q |
690 |
gtttcgaacaccatagattgtaatcccttatta |
722 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
32763285 |
gtttcgaacaccatagattgtaatcccttatta |
32763253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 419 - 475
Target Start/End: Complemental strand, 16914955 - 16914899
Alignment:
| Q |
419 |
gcatttaggctcttgaaccttgttattttgtgagctgtgactttagttaatttagga |
475 |
Q |
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|||||||| ||||||||||||||||||||||||| | |||| ||||||||||||| |
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| T |
16914955 |
gcatttagcatcttgaaccttgttattttgtgagcaataacttaagttaatttagga |
16914899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 415 - 453
Target Start/End: Original strand, 29603459 - 29603497
Alignment:
| Q |
415 |
tgatgcatttaggctcttgaaccttgttattttgtgagc |
453 |
Q |
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||||||||||||||| |||||||||||||||||||||| |
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| T |
29603459 |
tgatgcatttaggcttctgaaccttgttattttgtgagc |
29603497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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