View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11672_low_11 (Length: 374)
Name: NF11672_low_11
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11672_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 298
Target Start/End: Complemental strand, 6131935 - 6131647
Alignment:
| Q |
10 |
gcataggagaaattccttgaaaaagaactttggttttgcttgtatcaacctctgtattaacccaattagcccaagttgtcaaaccagttcgaaaagcttc |
109 |
Q |
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| T |
6131935 |
gcataggagaaattccttgaaaaagaactttggttttgcttgtatcaacctctttattaacccagttagcccaagttgtcaaaccagttcgaaaagcttc |
6131836 |
T |
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| Q |
110 |
catacgatccatgtctttcactattttgtcaccaatttgaatataatcccaactgcaataaaaagttaaacattactcgttagctcttgttgagaattac |
209 |
Q |
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| T |
6131835 |
catacgatccatgtctttcactattttgtcaccaatttgaatataatcccaactgcaataaaaagttaaacattactcgttagctcttgttgagaattac |
6131736 |
T |
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| Q |
210 |
cctttgtagtaaatcacaaatttgctccatgtgattaacgaaattttaaaataatctctaaaatttattaaaattttgatcacgtaaat |
298 |
Q |
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| T |
6131735 |
cctttgtagtaaatcacaaatttgctccatgtgattaacgaaattttaaaataatctctaaaatttattaaaattttgatcacgtaaat |
6131647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 6137735 - 6137575
Alignment:
| Q |
13 |
taggagaaattccttgaaaaagaactttggttttgcttgtatcaacctctgtattaacccaattagcccaagttgtcaaaccagttcgaaaagcttccat |
112 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
6137735 |
taggagaaattccttggaaaagaactttggttttgcttgtatcaacttctgcattaacccagttagcccaagttgtcaaaccagttctaaaagcttccat |
6137636 |
T |
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| Q |
113 |
acgatccatgtctttcactattttgtcaccaatttgaatataatcccaactgcaataaaaa |
173 |
Q |
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| T |
6137635 |
acgatccatgtctttcactattttgttacctatttgaatataatcccatctgcaataaaaa |
6137575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 14 - 173
Target Start/End: Original strand, 13284751 - 13284910
Alignment:
| Q |
14 |
aggagaaattccttgaaaaagaactttggttttgcttgtatcaacctctgtattaacccaattagcccaagttgtcaaaccagttcgaaaagcttccata |
113 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13284751 |
aggagaaattccttggaaaagaactttggttttgcttgtatcaacttctgcattaacccaattagcccaagttgtcaaaccagttctaaaagcttccata |
13284850 |
T |
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| Q |
114 |
cgatccatgtctttcactattttgtcaccaatttgaatataatcccaactgcaataaaaa |
173 |
Q |
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| T |
13284851 |
tggtccatctctttcactattttgttacctatttgaatataatcccatctgcaataaaaa |
13284910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 6162884 - 6162761
Alignment:
| Q |
10 |
gcataggagaaattccttgaaaaagaactttggttttgcttgtatcaacctctgtattaacccaattagcccaagttgtcaaaccagttcgaaaagcttc |
109 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
6162884 |
gcataggagaaattccttggaaaagaactttggttttgtttgtatcaacttctgcattaacccaattagcccaagttgtcaaaccacttctgaaagcttc |
6162785 |
T |
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| Q |
110 |
catacgatccatgtctttcactat |
133 |
Q |
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| T |
6162784 |
catacgatccatgtctttcactat |
6162761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 326 - 359
Target Start/End: Complemental strand, 6131651 - 6131618
Alignment:
| Q |
326 |
taaatgagttttgagcttctaagcgtaacttagt |
359 |
Q |
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| T |
6131651 |
taaatgagttttgagcttctaagcgtaacttagt |
6131618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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