View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11672_low_15 (Length: 341)
Name: NF11672_low_15
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11672_low_15 |
 | |
|
| [»] scaffold0012 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 48659760 - 48659447
Alignment:
| Q |
18 |
gttataacaagaatgaacaaagagaaaatatgatgcaaaaggcttgtatattatttagcaggaaagactggtgtacttatacaaccataaggaaagtaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48659760 |
gttataacaagaatgaacaaagagaaaatatgatgcaaaaggcttgtatattatttagcaggaaagactggtgtacttatacaaccataaggaaagtaga |
48659661 |
T |
|
| Q |
118 |
aaggcaaatacgttgccactaattaacataactgatgcctaaataaaaggaaatcaaatcagccacttaatctttattgcctagaatttaggagaattaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48659660 |
aaggcaaatacgttgccactaattaacataactgatgcctaaataaaaggaaatcaaatcagccacttaatctttattgcctagaatttaggagaattaa |
48659561 |
T |
|
| Q |
218 |
aactgactgagaagcttcaagggtcattcattaaacactcctccttgacactggagctgcatattccaagcctttttctcatgaactcaaatctagcttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48659560 |
aactgactgagaagcttcaagggtcattcattaaacactcctccttgacactggagctgcatattccaagcctttttctcatgaactcaaatctagcttt |
48659461 |
T |
|
| Q |
318 |
aggaagtgcctttg |
331 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
48659460 |
aggaagtgcctttg |
48659447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 48658629 - 48658393
Alignment:
| Q |
18 |
gttataacaagaatgaacaaagagaaaatatgatgcaaaaggcttgtatattatttagcaggaaagactggtgtacttatacaaccataaggaaagtaga |
117 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48658629 |
gttataacaagaatgaacaaagagcaaatatgatgcaaaaggcttgtgtattatttagcaggaaagactggtgtacttatacaaccataaggaaagtaga |
48658530 |
T |
|
| Q |
118 |
aaggcaaatacgttgccactaattaacataactgatgcctaaataaaaggaaatcaaatcagccacttaatctttattgcctagaatttaggagaattaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48658529 |
aaggcaaatacgttgccactaattaacataactgatgcctaaataaaaggaaatcaaatcagccacttaatctttattgcctagaatttaggagaattaa |
48658430 |
T |
|
| Q |
218 |
aactgactgagaagcttcaagggtcattcattaaaca |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48658429 |
aactgactgagaagcttcaagggtcattcattaaaca |
48658393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 31085290 - 31084977
Alignment:
| Q |
18 |
gttataacaagaatgaacaaagagaaaatatgatgcaaaaggcttgtatattatttagcaggaaagactggtgtacttatacaaccataaggaaagtaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31085290 |
gttataacaagaatgaacaaagagaaaatatgatgcaaaaggcttgtatattatttagcaggaaagactggtgtacttatacaaccataaggaaagtaga |
31085191 |
T |
|
| Q |
118 |
aaggcaaatacgttgccactaattaacataactgatgcctaaataaaaggaaatcaaatcagccacttaatctttattgcctagaatttaggagaattaa |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31085190 |
aaggcagatacgttgccactaattaacataactgatgcctaaataaaaggaaatcaaatcagccacttaatctttattgcctagaatttaggagaattaa |
31085091 |
T |
|
| Q |
218 |
aactgactgagaagcttcaagggtcattcattaaacactcctccttgacactggagctgcatattccaagcctttttctcatgaactcaaatctagcttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31085090 |
aactgactgagaagcttcaagggtcattcattaaacactcctccttgacactggagctgcatattccaagcctttttctcatgaactcaaatctagcttt |
31084991 |
T |
|
| Q |
318 |
aggaagtgcctttg |
331 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
31084990 |
aggaagtgcctttg |
31084977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 31595549 - 31595313
Alignment:
| Q |
18 |
gttataacaagaatgaacaaagagaaaatatgatgcaaaaggcttgtatattatttagcaggaaagactggtgtacttatacaaccataaggaaagtaga |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31595549 |
gttataacaagaatgaacaaagataaaatatgatgcaaaatacttgtattttatttagcaggaaagactggtgtacttatacaaccataaggaaagtaga |
31595450 |
T |
|
| Q |
118 |
aaggcaaatacgttgccactaattaacataactgatgcctaaataaaaggaaatcaaatcagccacttaatctttattgcctagaatttaggagaattaa |
217 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31595449 |
aaggcaaatacgttgccactaattagcataactgatgcctaaataaaaagaaatcaaatcagtcacttaatctttattgcctagaatttaggagaattaa |
31595350 |
T |
|
| Q |
218 |
aactgactgagaagcttcaagggtcattcattaaaca |
254 |
Q |
| |
|
||||||||||||| | |||||| |||||||||||||| |
|
|
| T |
31595349 |
aactgactgagaaacgtcaaggatcattcattaaaca |
31595313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 31081131 - 31081006
Alignment:
| Q |
18 |
gttataacaagaatgaacaaagagaaaatatgatgcaaaaggcttgtatattatttagcaggaaagactggtgtacttatacaaccataaggaaagtaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31081131 |
gttataacaagaatgaacaaagagaaaatatgatgcaaaaggcttgtatattatttagcaggaaagactggtgtacttatacaatcataaggaaagtaga |
31081032 |
T |
|
| Q |
118 |
aaggcaaatacgttgccactaattaa |
143 |
Q |
| |
|
|||||| |||| |||||||||||||| |
|
|
| T |
31081031 |
aaggcagatacattgccactaattaa |
31081006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 9310513 - 9310200
Alignment:
| Q |
18 |
gttataacaagaatgaacaaagagaaaatatgatgcaaaaggcttgtatattatttagcaggaaagactggtgtacttatacaaccataaggaaagtaga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9310513 |
gttataacaagaatgaacaaagagaaaatatgatgcaaaaggcttgtattttatttagcaggaaagactggtgtacttatacaaccataaggaaagtaga |
9310414 |
T |
|
| Q |
118 |
aaggcaaatacgttgccactaattaacataactgatgcctaaataaaaggaaatcaaatcagccacttaatctttattgcctagaatttaggagaattaa |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9310413 |
aaggcatatacgttgccactaattaacataactgatgcctaaataaaaggaaatcaaatcagccacttaatctttattgcctagaatttaggagaattaa |
9310314 |
T |
|
| Q |
218 |
aactgactgagaagcttcaagggtcattcattaaacactcctccttgacactggagctgcatattccaagcctttttctcatgaactcaaatctagcttt |
317 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9310313 |
aactgattgagaagcttcaagggtcattcattaaacactcctccttgacactggagctgcatattccaagcctttttctcatgaactcaaatctagcttt |
9310214 |
T |
|
| Q |
318 |
aggaagtgcctttg |
331 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9310213 |
aggaagtgcctttg |
9310200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 9306352 - 9306116
Alignment:
| Q |
18 |
gttataacaagaatgaacaaagagaaaatatgatgcaaaaggcttgtatattatttagcaggaaagactggtgtacttatacaaccataaggaaagtaga |
117 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9306352 |
gttataacaagaatgaacaaagagtatatatgatgcaaaaggcttgttttttatttagtaggaaagactggtgtacttatacaaccataaggaaagtaga |
9306253 |
T |
|
| Q |
118 |
aaggcaaatacgttgccactaattaacataactgatgcctaaataaaaggaaatcaaatcagccacttaatctttattgcctagaatttaggagaattaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9306252 |
aaggcaaatacgttgccactaattaacataactgatgcctaaataaaaggaaatcaaatcagccacttaatctttattgcctagaatttaggagaattaa |
9306153 |
T |
|
| Q |
218 |
aactgactgagaagcttcaagggtcattcattaaaca |
254 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9306152 |
aactgactgaaaagcttcaagggtcattcattaaaca |
9306116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 10134649 - 10134337
Alignment:
| Q |
18 |
gttataacaagaatgaacaaagagaaaatatga-tgcaaaaggcttgtatattatttagcaggaaagactggtgtacttatacaaccataaggaaagtag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
10134649 |
gttataacaagaatgaacaaagagaaaatatgaatgcaaaaggcttgtatattatttagcaggaaagactggtgtacttatacagccctaaggaaagtag |
10134550 |
T |
|
| Q |
117 |
aaaggcaaatacgttgccactaattaacataactgatgcctaaataaaaggaaatcaaatcagccacttaatctttattgcctagaatttaggagaatta |
216 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
10134549 |
aaaggcaaatacattgccactaattaacatagctgatgcctaaataaaaggaaaacaaatcagccacttattctttattgcctggaatttaggagaatta |
10134450 |
T |
|
| Q |
217 |
aaactgactgagaagcttcaagggtcattcattaaacactcctccttgacactggagctgcatattccaagcctttttctcatgaactcaaatctagctt |
316 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10134449 |
aaactgactgaaaagcttcaagggtcattcattaaacactcctccttgacactggagctgcatattccaagcctttttctcatgaactcaaatctagctt |
10134350 |
T |
|
| Q |
317 |
taggaagtgcctt |
329 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10134349 |
taggaagtgcctt |
10134337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 50966604 - 50966840
Alignment:
| Q |
18 |
gttataacaagaatgaacaaagagaaaatatgatgcaaaaggcttgtatattatttagcaggaaagactggtgtacttatacaaccataaggaaagtaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50966604 |
gttataacaagaatgaacaaagagaaaatatgatgcaaaaggcttgtatattatttagcaggaaagactggtgtacttatacaaccataaggaaagtaga |
50966703 |
T |
|
| Q |
118 |
aaggcaaatacgttgccactaattaacataactgatgcctaaataaaaggaaatcaaatcagccacttaatctttattgcctagaatttaggagaattaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50966704 |
aaggcaaatacgttgccactaattaacataactgatgcctaaataaaaggaaatcaaatcagccacttaatctttattgcctagaatttaggagaattaa |
50966803 |
T |
|
| Q |
218 |
aactgactgagaagcttcaagggtcattcattaaaca |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50966804 |
aactgactgagaagcttcaagggtcattcattaaaca |
50966840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 24 - 254
Target Start/End: Original strand, 20051807 - 20052035
Alignment:
| Q |
24 |
acaagaatgaacaaagagaaaatatga-tgcaaaaggcttgtatattatttagcaggaaagactggtgtacttatacaaccataaggaaagtagaaaggc |
122 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||||||| |||| | |||||||||| ||||||| ||||||||||||| |
|
|
| T |
20051807 |
acaagaatgaacaaaga--aaatatgaatgcaaaaggcctgtgtattatttagcaggaaatactg-tctacttatacagccataagaaaagtagaaaggc |
20051903 |
T |
|
| Q |
123 |
aaatacgttgccactaattaacataactgatgcctaaataaaaggaaatcaaatcagccacttaatctttattgcctagaatttaggagaattaaaactg |
222 |
Q |
| |
|
| | ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| |
|
|
| T |
20051904 |
agaaacgttgctactaattgacataactgatgcctaaataaaaggaaatcaaatcagccacttaatctttattgcctataatttaggagaatcataactg |
20052003 |
T |
|
| Q |
223 |
actgagaagcttcaagggtcattcattaaaca |
254 |
Q |
| |
|
|||| | ||||||| ||||||||||||||||| |
|
|
| T |
20052004 |
actgtgcagcttcatgggtcattcattaaaca |
20052035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 102 - 255
Target Start/End: Original strand, 154587 - 154735
Alignment:
| Q |
102 |
ccataaggaaagtagaaaggcaaatacgttgccactaattaacataactgatgcctaaataaaaggaaatcaaatcagccacttaatctttattgcctag |
201 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
154587 |
ccataaggaaagtagagaggcaaatacgttgccactaattaacata-----tgcctaaataaaagaaaatcaaatcaatcaattaatctttattgcctag |
154681 |
T |
|
| Q |
202 |
aatttaggagaattaaaactgactgagaagcttcaagggtcattcattaaacac |
255 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
154682 |
attttaggagaattaaaaccgactgagaagcttcaagggtcattcattaaacac |
154735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 154529 - 154587
Alignment:
| Q |
18 |
gttataacaagaatgaacaaagagaaaatatgatgcaaaaggcttgtatattatttagc |
76 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
154529 |
gttataacaaaaatgaacaaagagaaaataggatgcaaaaggcttgtatgttatttagc |
154587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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