View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11672_low_17 (Length: 328)

Name: NF11672_low_17
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11672_low_17
NF11672_low_17
[»] chr3 (1 HSPs)
chr3 (19-314)||(33990035-33990330)


Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 33990330 - 33990035
Alignment:
Q  19 caaccacagttctcaaaaatgtcaactgtttttatataatctgcaagatgaaatatttgcacacnnnnnnngatcatagatagagctaggaaaatgtgaa 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  33990330 caaccacagttctcaaaaatgtcaactgtttttgtataatctgcaagatgaaatatttgcacacaaaaaaagatcatagatagagctaggaaaatgtgaa 33990231  T
Q  119 gtatatataataccttttgcatgtttggtaggagcaatagctggggatgagtatgtaagaattgcattcaactgcgccatattagtttttgctgtatatt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33990230 gtatatataataccttttgcatgtttggtaggagcaatagctggggatgagtatgtaagaattgcattcaactgcgccatattagtttttgctgtatatt 33990131  T
Q  219 ttcagtcactcactcaccacctttttattatggttgtttggaccctcttgagatgctactgtttctcttctcgtgcatactgtttcagtttctgtc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33990130 ttcagtcactcactcaccacctttttattatggttgtttggaccctcttgagatgctactgtttctcttctcgtgcatactgtttctgtttctgtc 33990035  T

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