View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11672_low_18 (Length: 316)
Name: NF11672_low_18
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11672_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 39210452 - 39210154
Alignment:
| Q |
1 |
aaccatatggtatgaatggattaacgtaagcatgagcactatggttctgcaacaacattctttgtggaggagtgctttgaggatacaccaactcatctcc |
100 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39210452 |
aaccatatggtatgaagggatta-cgtaagcatgagcactatggttctgcaacaacattctttgtggaggagtgctttgaggatacaccaactcatctcc |
39210354 |
T |
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| Q |
101 |
atgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcgataaaattctttaaaaaatgtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
39210353 |
atgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagcacataaaattcttta-aaaatgtc |
39210255 |
T |
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| Q |
201 |
caaccgtcggtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgtatacatcaaatggagcatccattataatatatattc |
300 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
39210254 |
caaccgtcagtaaaatagactttcacgttcctctttttgacagccacctcaaagtcattcttgtatacatcaaatggaacctccattataatatatattc |
39210155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 7673907 - 7673978
Alignment:
| Q |
103 |
gcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaa |
174 |
Q |
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| T |
7673907 |
gcatatttctaacttcaaacagaaaaatgtgtcgatttgaaaaaataattgtgacccaagtaccagccaaaa |
7673978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 27510536 - 27510799
Alignment:
| Q |
1 |
aaccatatggtatgaatggattaacgtaagcatgagcactatggttctgcaacaacattctttgtggaggagtgctttgaggatacaccaactcatctcc |
100 |
Q |
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| T |
27510536 |
aaccatatggtatgaaggaatttacgtacgcatgagcactatggttctgcaacaacattctttgtggaggagtgctttgaggatacaccaactcatctcc |
27510635 |
T |
|
| Q |
101 |
atgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcga-taaaattctttaaaaaatgt |
199 |
Q |
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||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||| |
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| T |
27510636 |
atgtatattcctaacttcaaacagaaaaaggtgtcgattttcaaaaatgacagtgatccaagtaccagccaaaagcccattaaaattcttt-aaaaatgt |
27510734 |
T |
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| Q |
200 |
ccaaccgtcggtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgt |
264 |
Q |
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| T |
27510735 |
ccaaccgtcagtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgt |
27510799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 261
Target Start/End: Original strand, 42091774 - 42091912
Alignment:
| Q |
123 |
agaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtc-gataaaattctttaaaaaatgtccaaccgtcggtaaaatagact |
221 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||||||||| | | ||||||||| |||| | | |||||| || |||||| ||| |
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| T |
42091774 |
agaaaaaggcgtcgatttgcaaaaatgacagtgatccaagaaccagccaaaatcctgtaaaaattcttcaaaaca-gcccaaccatcatcaaaataaact |
42091872 |
T |
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| Q |
222 |
ttctcgttcctctttttgacagccacctcaaactcattct |
261 |
Q |
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||| |||||||||||| ||||| ||||||| |||||||| |
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| T |
42091873 |
ttcccgttcctcttttccacagctacctcaatctcattct |
42091912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 238
Target Start/End: Complemental strand, 31949368 - 31949210
Alignment:
| Q |
80 |
aggatacaccaactcatctccatgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcga |
179 |
Q |
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|||||||||||| | | ||||||||| ||| || || | | ||||||||| ||||||||||||||||| | |||||||||| |||| |||||| | | |
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| T |
31949368 |
aggatacaccaattaaactccatgcagatttcttaccaccatcagaaaaagatgtcgatttgcaaaaataattgtgatccaagcaccacccaaaatccca |
31949269 |
T |
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| Q |
180 |
-taaaattctttaaaaaatgtccaaccgtcggtaaaatagactttctcgttcctcttttt |
238 |
Q |
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|||| ||||| |||||||||||||| || |||||||| || || ||||| ||||||| |
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| T |
31949268 |
ttaaagctcttt-aaaaatgtccaaccatcagtaaaataaaccctcccgttcttcttttt |
31949210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 27592805 - 27592764
Alignment:
| Q |
133 |
gtcgatttgcaaaaatgacagtgatccaagtaccagccaaaa |
174 |
Q |
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| T |
27592805 |
gtcgatttgcaaaaatgacagtggtccaagaaccaaccaaaa |
27592764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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