View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11672_low_21 (Length: 258)
Name: NF11672_low_21
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11672_low_21 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 37119343 - 37119116
Alignment:
| Q |
19 |
attcaagtggggtaactacaaaaaggaaccaagtaaatctcattgtgtgtattttgttgattattggatcttcaattggaatttcagcttattgggctaa |
118 |
Q |
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| T |
37119343 |
attcaagtggggtaactacaaaaaggaaccaagtaaatctcattgtgtgtattttgttgattattggatcttcaattggaatttcagcttattgggctaa |
37119244 |
T |
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| Q |
119 |
tagtagtgagcataagtggattggatatacaatctttgttccattgtggtttttagggacaggtgctctttggctttttgttccaatggcaaagaagcct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119243 |
tagtagtgagcataagtggattggatatacaatctttgttccattgtggtttttagggacaggtgctctttggctttttgttccaatggcaaagaagcct |
37119144 |
T |
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| Q |
219 |
aagttatggggagttcctttggttcctt |
246 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
37119143 |
aagttatggggagttcctttggttcctt |
37119116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 37111088 - 37110864
Alignment:
| Q |
19 |
attcaagtggggtaactacaaaaaggaaccaagtaaatctcattgtgtgtattttgttgattattggatcttcaattggaatttcagcttattgggctaa |
118 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
37111088 |
attcaagtgaggtaactacaaaagggaaccaagtaaatctcattgtgtgtcttgtgttgattattggatcttcaattggactttcagcttcttgggctaa |
37110989 |
T |
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| Q |
119 |
tagtagtgagcataagtggattggatatacaatctttgttccattgtggtttttagggacaggtgctctttggctttttgttccaatggcaaagaagcct |
218 |
Q |
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| T |
37110988 |
cagt---gagcatggatggattggatacgcaatctttgttccattgtggtttttagggacaggtgctctttggctttttgttccaatggcaaagaagcct |
37110892 |
T |
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| Q |
219 |
aagttatggggagttcctttggttcctt |
246 |
Q |
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| T |
37110891 |
aaactatggggagttcctttggttcctt |
37110864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 37136910 - 37136983
Alignment:
| Q |
19 |
attcaagtggggtaactacaaaaaggaaccaagtaaatctcattgtgtgtattttgttgattattggatcttca |
92 |
Q |
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|||||| |||||||||||||||| || ||||| || |||||||| ||| || | |||||||||||||||||| |
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| T |
37136910 |
attcaactggggtaactacaaaagataatcaagttaagctcattgtatgtgttgttttgattattggatcttca |
37136983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 29258661 - 29258764
Alignment:
| Q |
147 |
acaatctttgttccattgtggtttttagggacaggtgctctttggctttttgttccaatggcaaagaagcctaagttatggggagttcctttggttcctt |
246 |
Q |
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||||| |||||||||||||||||||| || || |||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| | ||||| ||| |
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| T |
29258661 |
acaatttttgttccattgtggttttttggaaccggtggtctttggctttgtgttccaatggcaaagaagcctaaattatggggagttcatgtggtttctt |
29258760 |
T |
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| Q |
247 |
tgct |
250 |
Q |
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|||| |
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| T |
29258761 |
tgct |
29258764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0618 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 2991 - 3064
Alignment:
| Q |
147 |
acaatctttgttccattgtggtttttagggacaggtgctctttggctttttgttccaatggcaaagaagcctaa |
220 |
Q |
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||||| |||||||||||||||||||| || || |||| ||||||||||| |||||||||||||||||||||||| |
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| T |
2991 |
acaatttttgttccattgtggttttttggaaccggtggtctttggctttgtgttccaatggcaaagaagcctaa |
3064 |
T |
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