View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11672_low_26 (Length: 248)

Name: NF11672_low_26
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11672_low_26
NF11672_low_26
[»] chr1 (4 HSPs)
chr1 (170-232)||(38624002-38624064)
chr1 (1-53)||(38624988-38625040)
chr1 (1-53)||(46613962-46614014)
chr1 (129-173)||(38624868-38624912)
[»] chr7 (2 HSPs)
chr7 (1-53)||(45868096-45868148)
chr7 (1-48)||(30034436-30034483)
[»] chr5 (3 HSPs)
chr5 (1-49)||(40640265-40640313)
chr5 (1-48)||(32361827-32361874)
chr5 (1-48)||(32379058-32379105)
[»] chr8 (5 HSPs)
chr8 (1-48)||(31544682-31544729)
chr8 (1-48)||(31547836-31547883)
chr8 (1-48)||(31559544-31559591)
chr8 (1-47)||(31877211-31877257)
chr8 (1-48)||(31556538-31556585)
[»] chr4 (3 HSPs)
chr4 (1-48)||(38507767-38507814)
chr4 (1-48)||(55290065-55290112)
chr4 (1-47)||(30162003-30162049)
[»] chr2 (6 HSPs)
chr2 (1-48)||(6493544-6493591)
chr2 (1-48)||(8328453-8328500)
chr2 (1-47)||(9596952-9596998)
chr2 (1-47)||(18229458-18229504)
chr2 (1-47)||(33994623-33994669)
chr2 (7-47)||(21281552-21281592)
[»] chr3 (2 HSPs)
chr3 (1-47)||(32053543-32053589)
chr3 (1-47)||(50683112-50683158)


Alignment Details
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 38624064 - 38624002
Alignment:
Q  170 taagtgacatagtcatcattgaaatacaagtatgccactgaagattcgtattatacttaaatt 232  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38624064 taagtgacataatcatcattgaaatacaagtatgccagtgaagattcgtattatacttaaatt 38624002  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 38625040 - 38624988
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcataatta 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38625040 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcataatta 38624988  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 46613962 - 46614014
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcataatta 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46613962 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcattatta 46614014  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 38624912 - 38624868
Alignment:
Q  129 caattaaccactatattctccatttcaatttaattatcatttaag 173  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  38624912 caattaaccactgtattctccatttcaatttaattatcatttaag 38624868  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 45868148 - 45868096
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcataatta 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45868148 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcataatta 45868096  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30034483 - 30034436
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30034483 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 30034436  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40640313 - 40640265
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcata 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40640313 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcata 40640265  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32361874 - 32361827
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32361874 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 32361827  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32379105 - 32379058
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32379105 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 32379058  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31544682 - 31544729
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31544682 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 31544729  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31547836 - 31547883
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31547836 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 31547883  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31559544 - 31559591
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31559544 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 31559591  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 31877257 - 31877211
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31877257 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 31877211  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31556538 - 31556585
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 48  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  31556538 tcagattgaagatctgaaggtcgcgtgtttgatccacgctcaccgcat 31556585  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 38507814 - 38507767
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38507814 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 38507767  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 55290112 - 55290065
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  55290112 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 55290065  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 30162003 - 30162049
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30162003 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 30162049  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6493544 - 6493591
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6493544 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 6493591  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8328500 - 8328453
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8328500 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgcat 8328453  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9596952 - 9596998
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  9596952 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 9596998  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18229458 - 18229504
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  18229458 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 18229504  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33994669 - 33994623
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33994669 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 33994623  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 21281592 - 21281552
Alignment:
Q  7 tgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 47  Q
    |||||||| |||||||||||||| |||||| ||||||||||    
T  21281592 tgaagatccgaaggtcgcgtgtttgatccatgctcaccgca 21281552  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 32053589 - 32053543
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32053589 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 32053543  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 50683158 - 50683112
Alignment:
Q  1 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  50683158 tcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgca 50683112  T

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