View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11672_low_28 (Length: 243)
Name: NF11672_low_28
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11672_low_28 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
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|
Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 34691303 - 34691063
Alignment:
| Q |
1 |
cgtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34691303 |
cgtgaaagaggtatcacaattgacatttctatg--caagtttgagacaaccaagtactgcttcactctcattgatgctcccggacacagggatttcatta |
34691206 |
T |
|
| Q |
101 |
agaacatgagcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagac |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34691205 |
agaacatgatcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagac |
34691106 |
T |
|
| Q |
201 |
ctgggaacatgctcttcttgccttcactcttggtgtgaggcaa |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34691105 |
ctgggaacatgctcttcttgccttcactcttggtgtgaggcaa |
34691063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 34713715 - 34713475
Alignment:
| Q |
1 |
cgtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34713715 |
cgtgaaagaggtatcacaattgacatttctatg--caagtttgagacaaccaagtactgcttcactctcattgatgctcccggacacagggatttcatta |
34713618 |
T |
|
| Q |
101 |
agaacatgagcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagac |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34713617 |
agaacatgatcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagac |
34713518 |
T |
|
| Q |
201 |
ctgggaacatgctcttcttgccttcactcttggtgtgaggcaa |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34713517 |
ctgggaacatgctcttcttgccttcactcttggtgtgaggcaa |
34713475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 16232652 - 16232406
Alignment:
| Q |
1 |
cgtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16232652 |
cgtgaaagaggtatcacaattgacatttccatgtgcaagtttgagacaaccaagtactgttgcaccctcattgatgcccccggacacagggatttcatta |
16232553 |
T |
|
| Q |
101 |
a----gaacatgagcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtc |
196 |
Q |
| |
|
| |||||||| || |||||||||| ||||||||||||||||||| ||||| |||| |||||| ||||||| |||||||||||||||| |||||| |
|
|
| T |
16232552 |
attaagaacatgatcatcgggacctccgaagctgactgtgctgttctagtcatcaattccactactctcggtttgcaagctggttggtctaaggatggtc |
16232453 |
T |
|
| Q |
197 |
agacctgggaacatgctcttcttgccttcactcttggtgtgaggcaa |
243 |
Q |
| |
|
||||||||||||||||||| ||||| | ||||||||||||||||||| |
|
|
| T |
16232452 |
agacctgggaacatgctctacttgcgtacactcttggtgtgaggcaa |
16232406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 33861314 - 33861078
Alignment:
| Q |
1 |
cgtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcatta |
100 |
Q |
| |
|
||||||||||||||| | |||||| |||||||| | || |||||||||| | |||| | | |||| ||||||||||||| ||||||||||||| |||| |
|
|
| T |
33861314 |
cgtgaaagaggtatctccattgacgtttctatgcgtaattttgagacaaaccagtaccggtacactgtcattgatgcccctggacacagggattatatta |
33861215 |
T |
|
| Q |
101 |
agaacatgagcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagac |
200 |
Q |
| |
|
||||||||| | ||||| ||| | ||||| || ||| |||| || ||||||| || || | ||||| || ||||| |||||| |||||||||| |
|
|
| T |
33861214 |
agaacatgattaatgggacatcctatgctgattgcgctcttcttatcgttgattcctctcctggtggttttgaagttggtttttctaagcatggtcagac |
33861115 |
T |
|
| Q |
201 |
ctgggaacatgctcttcttgccttcactcttggtgtg |
237 |
Q |
| |
|
| | |||||||| ||||| |||| ||||||||||||| |
|
|
| T |
33861114 |
ccgtgaacatgcccttctcgcctgcactcttggtgtg |
33861078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 45993299 - 45993536
Alignment:
| Q |
1 |
cgtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcatta |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| ||||||||||||| |||||| ||| |||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
45993299 |
cgtgaaagaggtatcacaattgacagttctttgtcgaagtttgagacaaacaagtacagctgcactgtcattgatgcctccggacacagggatttcatta |
45993398 |
T |
|
| Q |
101 |
agaacatgagcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagac |
200 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| |||||||||||| |||||||||| |||||| | ||||| ||| ||| || ||| |||||||||| |
|
|
| T |
45993399 |
agaacatgatcaccgggacgtcccaagctgattgtgctgttctcatcattgattccactactcgtggttttgaagccggtatttcaaaggatggtcagac |
45993498 |
T |
|
| Q |
201 |
ctgggaacatgctcttcttgccttcactcttggtgtga |
238 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45993499 |
tcgtgaacatgctcttcttgccttcactcttggtgtga |
45993536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 38137667 - 38137903
Alignment:
| Q |
1 |
cgtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcatta |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||| ||||||||||| |||||||| | || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38137667 |
cgtgaaagaggtatcactattgacatttctctgtcaaagtttgagactaccaagtactactgcactctcattgatgcccccggacacagggatttcatta |
38137766 |
T |
|
| Q |
101 |
agaacatgagcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagac |
200 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || ||| | |||| |||||||| ||| || | |||||||| |
|
|
| T |
38137767 |
agaacatgattaccgggacgtcccaagctgactgtgctgttctcgtcattgattccacaactggtagttttgaagctggttattctcaggaaggtcagac |
38137866 |
T |
|
| Q |
201 |
ctgggaacatgctcttcttgccttcactcttggtgtg |
237 |
Q |
| |
|
|| ||||||||||||||||| ||| |||||||||| |
|
|
| T |
38137867 |
ctctgaacatgctcttcttgcattcgttcttggtgtg |
38137903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 43045472 - 43045230
Alignment:
| Q |
1 |
cgtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcatta |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| || | || |||||||||||||||||||| | || |||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
43045472 |
cgtgaaagaggtatcaccattgacattgctctctggaagtttgagacaaccaagtactactgcactgtcatcgatgcccccggacacagggatttcatta |
43045373 |
T |
|
| Q |
101 |
agaacatgagcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagac |
200 |
Q |
| |
|
||||||||| |||||| || ||||||||||| ||||| |||||| |||||||||| |||||| | ||||| ||| ||| |||||| |||||||||| |
|
|
| T |
43045372 |
agaacatgatcaccggaacatcccaagctgattgtgccgttctcatcattgattccactactggtggttttgaagccggtatttctaaggatggtcagac |
43045273 |
T |
|
| Q |
201 |
ctgggaacatgctcttcttgccttcactcttggtgtgaggcaa |
243 |
Q |
| |
|
| | ||||||||||| ||||| |||||||||||||||| |||| |
|
|
| T |
43045272 |
ccgtgaacatgctctccttgctttcactcttggtgtgaagcaa |
43045230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 43045925 - 43045683
Alignment:
| Q |
1 |
cgtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcatta |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| || | || |||||||||||||||||||| | || |||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
43045925 |
cgtgaaagaggtatcaccattgacattgctctctggaagtttgagacaaccaagtactactgcactgtcatcgatgcccccggacacagggatttcatta |
43045826 |
T |
|
| Q |
101 |
agaacatgagcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagac |
200 |
Q |
| |
|
||||||||| |||||| || ||||||||||| ||||| |||||| |||||||||| |||||| | ||||| ||| ||| |||||| |||||||||| |
|
|
| T |
43045825 |
agaacatgatcaccggaacatcccaagctgattgtgccgttctcatcattgattccactactggtggttttgaagccggtatttctaaggatggtcagac |
43045726 |
T |
|
| Q |
201 |
ctgggaacatgctcttcttgccttcactcttggtgtgaggcaa |
243 |
Q |
| |
|
| | ||||||||||| ||||| |||||||||||||||| |||| |
|
|
| T |
43045725 |
ccgtgaacatgctctccttgctttcactcttggtgtgaagcaa |
43045683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 43066482 - 43066724
Alignment:
| Q |
1 |
cgtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcatta |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| || | || |||||||||||||||||||| | || |||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
43066482 |
cgtgaaagaggtatcaccattgacattgctctctggaagtttgagacaaccaagtactactgcactgtcatcgatgcccccggacacagggatttcatta |
43066581 |
T |
|
| Q |
101 |
agaacatgagcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagac |
200 |
Q |
| |
|
||||||||| |||||| || ||||||||||| ||||| |||||| |||||||||| |||||| | ||||| ||| ||| |||||| |||||||||| |
|
|
| T |
43066582 |
agaacatgatcaccggaacatcccaagctgattgtgccgttctcatcattgattccactactggtggttttgaagccggtatttctaaggatggtcagac |
43066681 |
T |
|
| Q |
201 |
ctgggaacatgctcttcttgccttcactcttggtgtgaggcaa |
243 |
Q |
| |
|
| | ||||||||||| ||||| |||||||||||||||| |||| |
|
|
| T |
43066682 |
ccgtgaacatgctctccttgctttcactcttggtgtgaagcaa |
43066724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 43084353 - 43084111
Alignment:
| Q |
1 |
cgtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcatta |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| || | || |||||||||||||||||||| | || |||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
43084353 |
cgtgaaagaggtatcaccattgacattgctctctggaagtttgagacaaccaagtactactgcactgtcatcgatgcccccggacacagggatttcatta |
43084254 |
T |
|
| Q |
101 |
agaacatgagcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagac |
200 |
Q |
| |
|
||||||||| |||||| || ||||||||||| ||||| |||||| |||||||||| |||||| | ||||| ||| ||| |||||| |||||||||| |
|
|
| T |
43084253 |
agaacatgatcaccggaacatcccaagctgattgtgccgttctcatcattgattccactactggtggttttgaagccggtatttctaaggatggtcagac |
43084154 |
T |
|
| Q |
201 |
ctgggaacatgctcttcttgccttcactcttggtgtgaggcaa |
243 |
Q |
| |
|
| | ||||||||||| ||||| |||||||||||||||| |||| |
|
|
| T |
43084153 |
ccgtgaacatgctctccttgctttcactcttggtgtgaagcaa |
43084111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 45983519 - 45983750
Alignment:
| Q |
1 |
cgtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcatta |
100 |
Q |
| |
|
|||||||||||| | |||||||||||| | ||| ||||||||||||| |||||| || |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45983519 |
cgtgaaagaggtgttacaattgacattaccctgtcgaagtttgagacaaacaagtacaactgcactgtcattgatgcccccggacacagggatttcatta |
45983618 |
T |
|
| Q |
101 |
agaacatgagcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagac |
200 |
Q |
| |
|
||||||||| |||||| || ||||||||||||||||||||||||||||||||||| |||||| | ||||| ||| || || |||||||||||| |
|
|
| T |
45983619 |
agaacatgatcaccggaacgtcccaagctgactgtgctgttctcgtcattgattccactactggtggttttgaagccgg------tatgaatggtcagac |
45983712 |
T |
|
| Q |
201 |
ctgggaacatgctcttcttgccttcactcttggtgtga |
238 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
45983713 |
ccgtgaacatgctcttcttgccttcactcttggtgtga |
45983750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 3301207 - 3300966
Alignment:
| Q |
2 |
gtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcattaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| ||||||||||| || ||||| | || |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3301207 |
gtgaaagaggtatcacaattgacattgctctgtggaagtttgagactactaagtactactgcactgtcattgatgcccccggacacagggatttcattaa |
3301108 |
T |
|
| Q |
102 |
gaacatgagcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagacc |
201 |
Q |
| |
|
|||||||| || || || ||||||||||| ||||||||||| |||||||||| ||||| | ||||| ||| ||| || ||| |||| |||||| |
|
|
| T |
3301107 |
gaacatgattactggaacatcccaagctgattgtgctgttctgatcattgattccactaccggtggttttgaagccggtatatcaaaggatgggcagacc |
3301008 |
T |
|
| Q |
202 |
tgggaacatgctcttcttgccttcactcttggtgtgaggcaa |
243 |
Q |
| |
|
| ||||| ||||||||||| |||||||||||||||| |||| |
|
|
| T |
3301007 |
cgtgaacacgctcttcttgctttcactcttggtgtgaagcaa |
3300966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 7888586 - 7888821
Alignment:
| Q |
1 |
cgtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || |||||| ||||||||| || |||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7888586 |
cgtgaaagaggtatcacaattgacatttctctttggaagtttcagacaaccagctactgctgcactctcattgatgcccccggacacagggatttcatca |
7888685 |
T |
|
| Q |
101 |
agaacatgagcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagac |
200 |
Q |
| |
|
||||||||| ||||||| | || ||||||| |||||||||||| |||||||||| || ||| | ||||| ||| |||| | |||| |||||||||| |
|
|
| T |
7888686 |
agaacatgatcaccggggcgtctgaagctgattgtgctgttctcatcattgattccacaactggtggttttgaagccggtttttgtaaggatggtcagac |
7888785 |
T |
|
| Q |
201 |
ctgggaacatgctcttcttgccttcactcttggtgt |
236 |
Q |
| |
|
| ||||||| || ||||||||| |||| ||||| |
|
|
| T |
7888786 |
cactgaacatgttcaacttgccttcgctctcggtgt |
7888821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 7890851 - 7891005
Alignment:
| Q |
1 |
cgtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||||| | ||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7890851 |
cgtgaaagaggtatcacaattgacatttctctgtggaagtttgagacaaccaacttccgctgcactctcattgatgcccctggacacagggatttcatta |
7890950 |
T |
|
| Q |
101 |
agaacatgagcaccgggacctcccaagctgactgtgctgttctcgtcattgattc |
155 |
Q |
| |
|
||||||||| ||| || | ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
7890951 |
agaacatgatcactggagcgtccgaagctgactgtgctgttcttatcattgattc |
7891005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 51292093 - 51291870
Alignment:
| Q |
1 |
cgtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | ||||||||| |||| |||||| | | |||||||||||||||||||||||| || ||||||||| |
|
|
| T |
51292093 |
cgtgaaagaggtatcacaattgacatttctctatccaagtttga-acaatcaagtactattgcactctcattgatgcccccggacatgggaatttcatta |
51291995 |
T |
|
| Q |
101 |
agaacatgagcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagac |
200 |
Q |
| |
|
||||||||| | ||||| | | |||||||||||||| | ||||| || ||||||| || ||| | || || |||||||| |||||| |||||||||| |
|
|
| T |
51291994 |
agaacatgatcgccgggccgttccaagctgactgtgttattctcatccttgattccacaactggcgggtttgaagctggttattctaaggatggtcagac |
51291895 |
T |
|
| Q |
201 |
ctgggaacatgctcttcttgccttc |
225 |
Q |
| |
|
| | |||||| |||||||||||| |
|
|
| T |
51291894 |
cggtgaacatttgcttcttgccttc |
51291870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 40034507 - 40034659
Alignment:
| Q |
1 |
cgtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcatta |
100 |
Q |
| |
|
|||||||||||| | |||||||| ||||| |||| |||||||||||||||||| || || |||||||||||| ||||||||||||| |||||||| | |
|
|
| T |
40034507 |
cgtgaaagaggtgttacaattgatatttccatgtccaagtttgagacaaccaaataccactgcactctcattgacgcccccggacaca--gatttcatca |
40034604 |
T |
|
| Q |
101 |
agaacatgagcaccgggacctcccaagctgactgtgctgttctcgtcattgattc |
155 |
Q |
| |
|
|||||||| ||||| || |||| ||||||||||||||||||| |||||||||| |
|
|
| T |
40034605 |
agaacatgttaaccggcacgtccctagctgactgtgctgttctcatcattgattc |
40034659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 43076596 - 43076737
Alignment:
| Q |
1 |
cgtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcatta |
100 |
Q |
| |
|
|||||||||||||| || ||||| |||||| | || |||||||||||||| ||| | |||| | | ||||||||| ||| ||||||| | ||||||||| |
|
|
| T |
43076596 |
cgtgaaagaggtat-accattgagatttctctctggaagtttgagacaacaaagaactgctgcgttgtcattgatgtcccgggacacaagaatttcatta |
43076694 |
T |
|
| Q |
101 |
agaacatgagcaccgggacctcccaagctgactgtgctgttct |
143 |
Q |
| |
|
||||||||| ||| ||||| ||||||||||| |||||| |||| |
|
|
| T |
43076695 |
agaacatgatcactgggacgtcccaagctgattgtgctcttct |
43076737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 40034688 - 40034736
Alignment:
| Q |
190 |
aatggtcagacctgggaacatgctcttcttgccttcactcttggtgtga |
238 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
40034688 |
aatggtcagaccactgaacatgctcttcttgcctatactcttggtgtga |
40034736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 4620168 - 4620006
Alignment:
| Q |
1 |
cgtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcatta |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| | || ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4620168 |
cgtgaaagaggtatcacaatcgacatttctctgtccaagtttgagacaaccaagtactactgcactctcattgatgcccccggacacagagatttcatta |
4620069 |
T |
|
| Q |
101 |
agaacatgagcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactacta |
163 |
Q |
| |
|
||||||||| |||||| || |||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
4620068 |
agaacatgatcaccggaacatcccaagctgactgtgctgttctcgtatatgattctactacta |
4620006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 1846870 - 1846635
Alignment:
| Q |
1 |
cgtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || ||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1846870 |
cgtgaaagaggtatcacaattgacatttctctatggaagtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcatta |
1846771 |
T |
|
| Q |
101 |
agaacatgagcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagac |
200 |
Q |
| |
|
||||||||| |||||| | ||| ||||||||||||| ||||| ||||||| || || || | ||||| |||||||| | ||||||||||||||| |
|
|
| T |
1846770 |
agaacatgatcaccggagcatccgaagctgactgtgccgttcttatcattgactctacacctggtggttttgaagctggtttttgtaagaatggtcagac |
1846671 |
T |
|
| Q |
201 |
ctgggaacatgctcttcttgccttcactcttggtgt |
236 |
Q |
| |
|
| ||||||| || ||||||| | |||||||||| |
|
|
| T |
1846670 |
caatgaacatgttcaacttgcctacgctcttggtgt |
1846635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 163
Target Start/End: Complemental strand, 4297949 - 4297789
Alignment:
| Q |
3 |
tgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcattaag |
102 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| |||||||||||||| |||||| || || | ||||||||||||||||||| ||||| | ||||||| |
|
|
| T |
4297949 |
tgaaagaggtgccacaattgacatttctctgtccaagtttgagacaaacaagtacaactgcattgtcattgatgcccccggacatagggaatgcattaag |
4297850 |
T |
|
| Q |
103 |
aacatgagcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactacta |
163 |
Q |
| |
|
||||||| ||| || | |||| |||| |||||| |||||||||||||||||| ||||||| |
|
|
| T |
4297849 |
aacatgaccactggagcgtccctagctaactgtgatgttctcgtcattgattccactacta |
4297789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 4787317 - 4787425
Alignment:
| Q |
1 |
cgtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcatta |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||| |||||| || |||| |||||||||| |||||||||||||| | ||||| |
|
|
| T |
4787317 |
cgtgaaagaggtgccacaattgacatttctatgtccaagtttgagacaaacaagtacaactgcactgtcattgatgctcccggacacagggaatacatta |
4787416 |
T |
|
| Q |
101 |
agaacatga |
109 |
Q |
| |
|
|||||||| |
|
|
| T |
4787417 |
ggaacatga |
4787425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 4787455 - 4787509
Alignment:
| Q |
189 |
gaatggtcagacctgggaacatgctcttcttgccttcactcttggtgtgaggcaa |
243 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
4787455 |
gaatggtcagacccttgaacatgctcttcttgccttcactgttggtgtgaagcaa |
4787509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 4297763 - 4297720
Alignment:
| Q |
192 |
tggtcagacctgggaacatgctcttcttgccttcactcttggtg |
235 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
4297763 |
tggtcagacctttgaacatgctcttcttgccttcaatcttggtg |
4297720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 4231945 - 4231703
Alignment:
| Q |
1 |
cgtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| ||||||||||| || ||||| | || |||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
4231945 |
cgtgaaagaggtatcacaattgacattgctctgtggaagtttgagaccactaagtactactgcactgtcattgatgcccctggacacagggatttcatta |
4231846 |
T |
|
| Q |
101 |
agaacatgagcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagac |
200 |
Q |
| |
|
||||||||| || || || ||||||||||| |||||||||||| |||||||||| || ||| | ||||| ||||||| || ||| |||||||||| |
|
|
| T |
4231845 |
agaacatgattactggtacatcccaagctgattgtgctgttctcatcattgattccaccactggtggttttgaagctggtatttccaaggatggtcagac |
4231746 |
T |
|
| Q |
201 |
ctgggaacatgctcttcttgccttcactcttggtgtgaggcaa |
243 |
Q |
| |
|
| ||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
4231745 |
tcgtgaacatgctctccttgctttcactcttggtgtgaggcaa |
4231703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 16349614 - 16349475
Alignment:
| Q |
4 |
gaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcattaaga |
103 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16349614 |
gaaagaggtatcacaattgacaattctatgttgaattttgagacaaccaagtaccgctgcactatcattgatgcccccggacacagggatttcattaaga |
16349515 |
T |
|
| Q |
104 |
acatgagcaccgggacctcccaagctgactgtgctgttct |
143 |
Q |
| |
|
|||||| || ||||| ||||||||||| |||||| |||| |
|
|
| T |
16349514 |
acatgattactgggacatcccaagctgattgtgctcttct |
16349475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 7519526 - 7519763
Alignment:
| Q |
1 |
cgtgaaagaggtatcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcatta |
100 |
Q |
| |
|
||||||||||| || || ||||| ||| || |||| || |||||||| |||||||| | || ||| |||||||||| |||||||| | |||||||| | |
|
|
| T |
7519526 |
cgtgaaagaggaattaccattgatattgctttgtggaaatttgagaccaccaagtactactgcacagtcattgatgctcccggacatcgtgatttcatca |
7519625 |
T |
|
| Q |
101 |
agaacatgagcaccgggacctcccaagctgactgtgctgttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagac |
200 |
Q |
| |
|
||||||||| || || |||||||| ||||| |||||||| || ||||||| || || ||| | ||||| ||||||| |||||| |||| ||||| |
|
|
| T |
7519626 |
agaacatgattactggaacctcccaggctgattgtgctgtccttatcattgactccaccactggtggttttgaagctggtatctctaaggatggacagac |
7519725 |
T |
|
| Q |
201 |
ctgggaacatgctcttcttgccttcactcttggtgtga |
238 |
Q |
| |
|
| | || |||||||||||||| || |||||||| |||| |
|
|
| T |
7519726 |
ccgtgagcatgctcttcttgcatttactcttggagtga |
7519763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 238
Target Start/End: Original strand, 7528936 - 7529134
Alignment:
| Q |
40 |
tttgagacaaccaagtattgcttcactctcattgatgcccccggacacagggatttcattaagaacatgagcaccgggacctcccaagctgactgtgctg |
139 |
Q |
| |
|
|||||||| |||||||| | || ||| |||||||||| |||||||| | |||||||| |||||||||| || || |||||||| ||||| ||||| | |
|
|
| T |
7528936 |
tttgagaccaccaagtactactgcacagtcattgatgctcccggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtgccg |
7529035 |
T |
|
| Q |
140 |
ttctcgtcattgattcgactactagaggtttgcgagctggttggtctaagaatggtcagacctgggaacatgctcttcttgccttcactcttggtgtga |
238 |
Q |
| |
|
| || ||||||| || || ||| | ||||| ||||||| |||||| |||| |||||| | || || ||||||||||| || |||||||| |||| |
|
|
| T |
7529036 |
tgcttatcattgactccaccactggtggttttgaagctggtatctctaaggatggacagacccgtgagcacgctcttcttgcatttactcttggagtga |
7529134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 39242152 - 39242299
Alignment:
| Q |
14 |
tcacaattgacatttctatgtgcaagtttgagacaaccaagtattgcttcactctcat---tgatgcccccggacacagggat---ttcattaagaacat |
107 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||||| ||||| | || |||| |||| ||||||| | ||| |||||||| ||| ||| | ||| |
|
|
| T |
39242152 |
tcacaattgacattgctctgtccaagtttgagacaacaaagtactactgcactgtcattgatgatgcctctggagacagggatttcttccttaccaccat |
39242251 |
T |
|
| Q |
108 |
gagcaccgggacctcccaagctgactgtgctgttctcgtcattgattc |
155 |
Q |
| |
|
|| || | | || |||||| ||||||||| |||||||||||||||||| |
|
|
| T |
39242252 |
gatcaacagaacgtcccaacctgactgtgttgttctcgtcattgattc |
39242299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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