View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11672_low_3 (Length: 612)

Name: NF11672_low_3
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11672_low_3
NF11672_low_3
[»] chr6 (9 HSPs)
chr6 (11-596)||(9411989-9412571)
chr6 (408-454)||(28935345-28935391)
chr6 (362-442)||(7132324-7132407)
chr6 (362-442)||(7135247-7135330)
chr6 (362-442)||(7138170-7138253)
chr6 (407-458)||(6410698-6410749)
chr6 (483-530)||(6596310-6596357)
chr6 (407-457)||(6423909-6423959)
chr6 (407-448)||(6395550-6395591)
[»] chr1 (6 HSPs)
chr1 (343-596)||(7555057-7555319)
chr1 (83-142)||(7561332-7561391)
chr1 (475-524)||(9581627-9581676)
chr1 (475-524)||(9587198-9587247)
chr1 (496-529)||(52094092-52094125)
chr1 (84-144)||(7555512-7555572)
[»] chr8 (6 HSPs)
chr8 (345-457)||(17642872-17642987)
chr8 (343-457)||(17635591-17635708)
chr8 (416-535)||(32151894-32152013)
chr8 (495-535)||(18314728-18314768)
chr8 (340-449)||(18314570-18314682)
chr8 (495-535)||(14004069-14004109)
[»] chr4 (14 HSPs)
chr4 (333-535)||(1755479-1755684)
chr4 (343-448)||(661871-661979)
chr4 (352-448)||(553772-553871)
chr4 (343-535)||(7225096-7225290)
chr4 (346-532)||(8186297-8186486)
chr4 (344-391)||(53760229-53760276)
chr4 (333-448)||(1533678-1533796)
chr4 (86-135)||(554097-554146)
chr4 (90-131)||(566754-566795)
chr4 (496-545)||(2373565-2373614)
chr4 (84-136)||(642341-642393)
chr4 (489-533)||(659977-660021)
chr4 (87-139)||(1537245-1537297)
chr4 (414-442)||(55907684-55907712)
[»] chr7 (5 HSPs)
chr7 (332-535)||(7977799-7978005)
chr7 (370-457)||(10615717-10615807)
chr7 (346-457)||(10168985-10169102)
chr7 (346-457)||(10176510-10176627)
chr7 (93-130)||(10616209-10616246)
[»] scaffold1155 (1 HSPs)
scaffold1155 (343-442)||(1821-1923)
[»] scaffold0345 (1 HSPs)
scaffold0345 (343-442)||(8293-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (343-442)||(30584-30686)
[»] chr5 (4 HSPs)
chr5 (332-385)||(32268614-32268667)
chr5 (340-457)||(41900426-41900546)
chr5 (333-382)||(41886532-41886581)
chr5 (93-133)||(41886296-41886336)
[»] chr3 (3 HSPs)
chr3 (343-388)||(51763325-51763370)
chr3 (88-135)||(51120325-51120372)
chr3 (493-535)||(51763487-51763529)
[»] chr2 (3 HSPs)
chr2 (340-448)||(45244780-45244891)
chr2 (88-137)||(45244521-45244570)
chr2 (414-442)||(1036620-1036648)


Alignment Details
Target: chr6 (Bit Score: 532; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 11 - 596
Target Start/End: Complemental strand, 9412571 - 9411989
Alignment:
Q  11 cagagacacagctatgcagttcagtcatcaacaaaaaagaagacgaaaaacaacaacggttgtttctgccgatgctgatttttatttacctgatgaatgt 110  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||   |||||||||||||||||||||||    
T  9412571 cagaaacacagccatgcagttcagtcatcaacaaaaaagaagacgaaaaacaacaacggttgttgttgccgatg---atttttatttacctgatgaatgt 9412475  T
Q  111 tgggaaagtatcttcaaattcctcaacaatggtgctaactatcgcgacttgaagtctctctcgcttgtctccaagttgtttctctccatcaccaaccgtc 210  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9412474 tgggaaagtatcttcaaattcctcaacgatggtgctaactatcgcgagttgaagtctctctcgcttgtctccaagttgtttctctccatcaccaaccgtc 9412375  T
Q  211 ttttcatctcacttacggtctacaacaacggaataggtccttttctcggtagcatactcggtaggttcaccaacctcacctctctcaaaatcaagcgcta 310  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9412374 ttgtcatctcacttacggtctacaacaacggaataggtccttttctcggtagcatactcggtaggttcaccaacctcacctctctcaaaatcaagcgcta 9412275  T
Q  311 caaaagcattgattttaatgtgcttctcggtcaaatctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgctggg 410  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9412274 caaacgcattgattttaatgtgcttctcggtcaaatctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgctggg 9412175  T
Q  411 ttgcgagctttctcccaaaatattacaactttaacctcattcacttgctcaagaatgggttctatcaatagcaatgacttgttactcattgctgaatgtt 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9412174 ttgcgagctttctcccaaaatattacaactttaacctcattcacttcctcaagaatgggttctatcaatagcaatgacttgttactcattgctgaatgtt 9412075  T
Q  511 tccctttgcttgaagaactcgacctgtgttatccccgtaaatttaaggatcatagctttcttaatagggtagagactctttcattg 596  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9412074 tccctttgcttgaagaactcaacctgtgttatccccgtaaatttaaggatcatagctttcttaatagggtagagactctttcattg 9411989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 454
Target Start/End: Complemental strand, 28935391 - 28935345
Alignment:
Q  408 gggttgcgagctttctcccaaaatattacaactttaacctcattcac 454  Q
    ||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  28935391 gggttgcgagccttctcccaaaacattacaactttaacctcactcac 28935345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 362 - 442
Target Start/End: Complemental strand, 7132407 - 7132324
Alignment:
Q  362 gaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaacttt 442  Q
    ||||||| |||| |||| | |||||||||| | |||| |||| ||   |||||||||||||||||||||||| |||||||||||    
T  7132407 gaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 7132324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 362 - 442
Target Start/End: Complemental strand, 7135330 - 7135247
Alignment:
Q  362 gaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaacttt 442  Q
    ||||||| |||| |||| | |||||||||| | |||| |||| ||   |||||||||||||||||||||||| |||||||||||    
T  7135330 gaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 7135247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 362 - 442
Target Start/End: Complemental strand, 7138253 - 7138170
Alignment:
Q  362 gaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaacttt 442  Q
    ||||||| |||| |||| | |||||||||| | |||| |||| ||   |||||||||||||||||||||||| |||||||||||    
T  7138253 gaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 7138170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 458
Target Start/End: Complemental strand, 6410749 - 6410698
Alignment:
Q  407 tgggttgcgagctttctcccaaaatattacaactttaacctcattcacttgc 458  Q
    |||||||| || |||||||||||| ||||||||||| ||||| |||||||||    
T  6410749 tgggttgcaagttttctcccaaaacattacaactttgacctctttcacttgc 6410698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 530
Target Start/End: Original strand, 6596310 - 6596357
Alignment:
Q  483 aatgacttgttactcattgctgaatgtttccctttgcttgaagaactc 530  Q
    ||||||||||||||||||||||| |||||||| |||||  ||||||||    
T  6596310 aatgacttgttactcattgctgattgtttcccattgctcaaagaactc 6596357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 457
Target Start/End: Complemental strand, 6423959 - 6423909
Alignment:
Q  407 tgggttgcgagctttctcccaaaatattacaactttaacctcattcacttg 457  Q
    |||||||||||||||||||||||| || |||||||| |||||  |||||||    
T  6423959 tgggttgcgagctttctcccaaaacataacaactttgacctctctcacttg 6423909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 448
Target Start/End: Complemental strand, 6395591 - 6395550
Alignment:
Q  407 tgggttgcgagctttctcccaaaatattacaactttaacctc 448  Q
    |||||||| |||| |||||||||||||||||||||| |||||    
T  6395591 tgggttgcaagctctctcccaaaatattacaactttgacctc 6395550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 1e-61; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 343 - 596
Target Start/End: Complemental strand, 7555319 - 7555057
Alignment:
Q  343 aaatctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaac 439  Q
    |||||||| |||| |||||||| ||  |||||||| || | |||||||| | |||||| || ||   ||| |||||||||||||||||||||||||||||    
T  7555319 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 7555220  T
Q  440 tttaacctcattcacttgctcaagaatgggttctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgacctgtgt 539  Q
    |||||||||| ||||||| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||    
T  7555219 tttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgctcgaagaactcaacctgggt 7555120  T
Q  540 tatccccg---taaatttaaggatcatag---ctttcttaatagggtagagactctttcattg 596  Q
    ||||||||   ||||||||||||||||||   ||| |||||| || | |||||||||||||||    
T  7555119 tatccccgtaataaatttaaggatcatagtaacttccttaatgggttggagactctttcattg 7555057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 7561391 - 7561332
Alignment:
Q  83 tgctgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaacaatgg 142  Q
    |||||||||||||||||||||||| |||||| ||  | ||||||| ||||||||||||||    
T  7561391 tgctgatttttatttacctgatgactgttggaaacatgtcttcaagttcctcaacaatgg 7561332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 524
Target Start/End: Complemental strand, 9581676 - 9581627
Alignment:
Q  475 tcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaa 524  Q
    ||||||| ||||||||||| |||||||| |||||||| ||||| ||||||    
T  9581676 tcaatagtaatgacttgttcctcattgccgaatgttttcctttacttgaa 9581627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 524
Target Start/End: Complemental strand, 9587247 - 9587198
Alignment:
Q  475 tcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaa 524  Q
    ||||||| ||||||||||| ||||||||  ||||||||||||| ||||||    
T  9587247 tcaatagtaatgacttgttcctcattgccaaatgtttccctttacttgaa 9587198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 529
Target Start/End: Complemental strand, 52094125 - 52094092
Alignment:
Q  496 tcattgctgaatgtttccctttgcttgaagaact 529  Q
    |||||||||||||||||||||| |||||||||||    
T  52094125 tcattgctgaatgtttccctttccttgaagaact 52094092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 7555572 - 7555512
Alignment:
Q  84 gctgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaacaatggtg 144  Q
    |||| |||||||||||| |||||||||||| ||  | |||||||||| |||||||| ||||    
T  7555572 gctgctttttatttacccgatgaatgttggcaacttgtcttcaaatttctcaacaacggtg 7555512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 345 - 457
Target Start/End: Original strand, 17642872 - 17642987
Alignment:
Q  345 atctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaactt 441  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||||||| |   |||||| | |||||||||||| |||||||||||||    
T  17642872 atctcttgttttccattgaaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactt 17642971  T
Q  442 taacctcattcacttg 457  Q
    | |||||  |||||||    
T  17642972 tgacctctctcacttg 17642987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 343 - 457
Target Start/End: Original strand, 17635591 - 17635708
Alignment:
Q  343 aaatctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaac 439  Q
    ||||||||| ||||||||||||||||  |||||| ||||| |||||||| | |||||||||  |   |||||| |||||||||||||  |||||||||||    
T  17635591 aaatctctccttttccattgaaactcatatcactcaatctgtccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattacaac 17635690  T
Q  440 tttaacctcattcacttg 457  Q
    ||| |||||  |||||||    
T  17635691 tttgacctctctcacttg 17635708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 535
Target Start/End: Complemental strand, 32152013 - 32151894
Alignment:
Q  416 agctttctcccaaaatattacaactttaacctcattcacttgctcaagaatgggttctatcaatagcaatgacttgttactcattgctgaatgtttccct 515  Q
    ||||||||||||||| ||||||||||| |||||  ||||||| ||  | ||   |||| ||||| |||  |||||||| |||||||| || |||||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctcacttgttctcgtatttattctttcaatggcaccgacttgttcctcattgccgattgtttccct 32151914  T
Q  516 ttgcttgaagaactcgacct 535  Q
    ||||| |||||||| |||||    
T  32151913 ttgctcgaagaacttgacct 32151894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 495 - 535
Target Start/End: Original strand, 18314728 - 18314768
Alignment:
Q  495 ctcattgctgaatgtttccctttgcttgaagaactcgacct 535  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  18314728 ctcattgctgattgtttccctttgctcgaagaactcgacct 18314768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 449
Target Start/End: Original strand, 18314570 - 18314682
Alignment:
Q  340 gtcaaatctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattac 436  Q
    |||||||||||| ||| ||||||||||||  || |||  ||||||||   || | ||||||||||||   ||| || |||| |||||| |||||||||||    
T  18314570 gtcaaatctctcttttcccattgaaactcaaatgactcgatctctcctgtcaacccaccattcccgcaaatggcttacgagttttctctcaaaatattac 18314669  T
Q  437 aactttaacctca 449  Q
    |||||| ||||||    
T  18314670 aactttgacctca 18314682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 495 - 535
Target Start/End: Complemental strand, 14004109 - 14004069
Alignment:
Q  495 ctcattgctgaatgtttccctttgcttgaagaactcgacct 535  Q
    ||||||||||| ||||| |||||||| ||||||||||||||    
T  14004109 ctcattgctgattgttttcctttgctagaagaactcgacct 14004069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 333 - 535
Target Start/End: Complemental strand, 1755684 - 1755479
Alignment:
Q  333 cttctcggtcaaatctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgct---gggttgcgagctttctcccaaa 429  Q
    |||||| | |||||||||||||| |||||||||||  ||||  |||||||||||||||| | | |||||||| |    ||||||| ||||||||| ||||    
T  1755684 cttctctgccaaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaaagggttgcaagctttctctcaaa 1755585  T
Q  430 atattacaactttaacctcattcacttgctcaagaatgggttctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaact 529  Q
    | ||||||||||| |||||  |||| || || |  || | |  | || ||| ||||||||| || ||||||||||| |||||||||||||||||||||||    
T  1755584 agattacaactttgacctctctcacatgttccaacatcgctcatctccataccaatgacttcttcctcattgctgactgtttccctttgcttgaagaact 1755485  T
Q  530 cgacct 535  Q
    | ||||    
T  1755484 caacct 1755479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 343 - 448
Target Start/End: Complemental strand, 661979 - 661871
Alignment:
Q  343 aaatctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgct---gggttgcgagctttctcccaaaatattacaac 439  Q
    |||||||||||| ||| |||||| || | ||||| ||||||||||||||   |||||||||||||   || |||||||||||||||||| ||||||||||    
T  661979 aaatctctcgttctccgttgaaaatcacgtcactcaatctctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaac 661880  T
Q  440 tttaacctc 448  Q
    |||||||||    
T  661879 tttaacctc 661871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 448
Target Start/End: Complemental strand, 553871 - 553772
Alignment:
Q  352 gttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaactttaacctc 448  Q
    ||||||||||||| ||| |||||||  |||||||| |  | | ||||||||||||   |||||||||||||||||||||||| ||||||||||| |||||    
T  553871 gttttccattgaacctcacatcactcgatctctcccaaaaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctc 553772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 535
Target Start/End: Original strand, 7225096 - 7225290
Alignment:
Q  343 aaatctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaac 439  Q
    |||||||||||||||||||||||||| ||||||||||| |||| ||  |   || |||||| ||   |||||||| |||| | || ||||||||||||||    
T  7225096 aaatctctcgttttccattgaaactcacatcacttaatatctcgaataaatccatcattccagcacgtgggttgcaagctctttctcaaaatattacaac 7225195  T
Q  440 tttaacctcattcacttgctcaagaatgggttctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgacct 535  Q
    ||| |||||  |||| || || |  ||   |||| ||| ||||| |||| |||| ||||| || || |||||||||||||| ||||||||||||||    
T  7225196 tttgacctctctcacatgttcca-catttattctgtcactagcactgacatgttcctcatcgcggattgtttccctttgctcgaagaactcgacct 7225290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 532
Target Start/End: Original strand, 8186297 - 8186486
Alignment:
Q  346 tctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaacttt 442  Q
    ||||||||||| | ||||| ||| ||||||| |||||||| ||| | | ||||||||| ||   ||| ||||||| | |||||| |||||||||||||||    
T  8186297 tctctcgtttttcgttgaacctcacatcactcaatctctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaacttt 8186396  T
Q  443 aacctcattcacttgctcaagaatgggttctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcga 532  Q
     |||||| |||| || || |  || |  ||||||||||||| |||| | || ||||| || || ||||| ||||| || |||||||||||    
T  8186397 gacctcactcacatgttccaacattgaatctatcaatagcactgacatcttcctcatcgccgattgttttcctttcctagaagaactcga 8186486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 344 - 391
Target Start/End: Original strand, 53760229 - 53760276
Alignment:
Q  344 aatctctcgttttccattgaaactctcatcacttaatctctccaacca 391  Q
    |||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  53760229 aatctctcgtttcccattgaaactcacatcactcaatctctccaacca 53760276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 448
Target Start/End: Original strand, 1533678 - 1533796
Alignment:
Q  333 cttctcggtcaaatctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgct---gggttgcgagctttctcccaaa 429  Q
    |||||| || ||||||||| ||||||||||||| || |||| ||| || | ||  |||| | ||| |||||||||   || ||||||  |||||||||||    
T  1533678 cttctctgtaaaatctctctttttccattgaaaatcacatcccttgatttatctgaccaacccacgattcccgctaaaggcttgcgatatttctcccaaa 1533777  T
Q  430 atattacaactttaacctc 448  Q
    | |||||||||||||||||    
T  1533778 aaattacaactttaacctc 1533796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 554146 - 554097
Alignment:
Q  86 tgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctca 135  Q
    ||||||||| || ||||||||||||||||||  | |||||||||||||||    
T  554146 tgatttttactttcctgatgaatgttgggaatttgtcttcaaattcctca 554097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 566795 - 566754
Alignment:
Q  90 ttttatttacctgatgaatgttgggaaagtatcttcaaattc 131  Q
    ||||||||||||||||| ||||||||| || |||||||||||    
T  566795 ttttatttacctgatgactgttgggaacgtgtcttcaaattc 566754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 545
Target Start/End: Original strand, 2373565 - 2373614
Alignment:
Q  496 tcattgctgaatgtttccctttgcttgaagaactcgacctgtgttatccc 545  Q
    |||||||||| |||||||||||||| |||||||| ||| || ||||||||    
T  2373565 tcattgctgattgtttccctttgctcgaagaacttgacttgagttatccc 2373614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 642393 - 642341
Alignment:
Q  84 gctgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaa 136  Q
    ||||| ||||||||||||||||||||||||||  | |||||||| || |||||    
T  642393 gctgagttttatttacctgatgaatgttgggagtgcatcttcaattttctcaa 642341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 489 - 533
Target Start/End: Complemental strand, 660021 - 659977
Alignment:
Q  489 ttgttactcattgctgaatgtttccctttgcttgaagaactcgac 533  Q
    ||||| ||||| ||||| ||||||||||||||||| |||||||||    
T  660021 ttgtttctcatagctgattgtttccctttgcttgacgaactcgac 659977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 1537245 - 1537297
Alignment:
Q  87 gatttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaacaa 139  Q
    ||||| |||||||||||||| ||||||||| || | |||| ||||||||||||    
T  1537245 gatttatatttacctgatgagtgttgggaatgtgtattcagattcctcaacaa 1537297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 55907684 - 55907712
Alignment:
Q  414 cgagctttctcccaaaatattacaacttt 442  Q
    |||||||||||||||||||||||||||||    
T  55907684 cgagctttctcccaaaatattacaacttt 55907712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 332 - 535
Target Start/End: Complemental strand, 7978005 - 7977799
Alignment:
Q  332 gcttctcggtcaaatctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgct---gggttgcgagctttctcccaa 428  Q
    ||||||| | ||||| ||| |||| ||||||||| || | ||||| |||||||||||||| |  |||||||| |||   ||||||| || ||||||||||    
T  7978005 gcttctccgccaaatttcttgtttcccattgaaaatcacgtcactcaatctctccaaccaccctaccattccggcttatgggttgccagttttctcccaa 7977906  T
Q  429 aatattacaactttaacctcattcacttgctcaagaatgggttctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaac 528  Q
    |||||| ||||||| |||||| |||  || || |  || |  ||||| |||| |||  || |||| ||||| || || ||||||||||||||||||||||    
T  7977905 aatattgcaactttgacctcactcaaatgttctaacattgaatctattaatatcaaccacatgtttctcatagcagattgtttccctttgcttgaagaac 7977806  T
Q  529 tcgacct 535  Q
    |||||||    
T  7977805 tcgacct 7977799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 370 - 457
Target Start/End: Complemental strand, 10615807 - 10615717
Alignment:
Q  370 catcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaactttaacctcattcacttg 457  Q
    ||||||||||| | |||||||| | |||  |||||||   |||||| ||||||||||||||||| ||||||||||| |||||  |||||||    
T  10615807 catcacttaatatttccaaccaacccacagttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttg 10615717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 457
Target Start/End: Original strand, 10168985 - 10169102
Alignment:
Q  346 tctctcgttttccattgaa---actctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaac 439  Q
    ||||||||||||| |||||   |||| |||||||  || | ||| ||||  |||||||||||||   ||||||||||| |||||| |||||||||| |||    
T  10168985 tctctcgttttcctttgaagaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaac 10169084  T
Q  440 tttaacctcattcacttg 457  Q
    ||| |||||  |||||||    
T  10169085 tttgacctctctcacttg 10169102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 457
Target Start/End: Original strand, 10176510 - 10176627
Alignment:
Q  346 tctctcgttttccattgaa---actctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaac 439  Q
    ||||||||||||| |||||   |||| |||||||  || | ||| ||||  |||||||||||||   ||||||||||| |||||| |||||||||| |||    
T  10176510 tctctcgttttcctttgaagaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaac 10176609  T
Q  440 tttaacctcattcacttg 457  Q
    ||| |||||  |||||||    
T  10176610 tttgacctctctcacttg 10176627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 10616246 - 10616209
Alignment:
Q  93 tatttacctgatgaatgttgggaaagtatcttcaaatt 130  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  10616246 tatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 343 - 442
Target Start/End: Original strand, 1821 - 1923
Alignment:
Q  343 aaatctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaac 439  Q
    ||||||||||||| |||||||| ||| ||||||| ||||||||| |||| | ||  ||||||||   ||||||||||| ||| |||||||||||||||||    
T  1821 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 1920  T
Q  440 ttt 442  Q
    |||    
T  1921 ttt 1923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 343 - 442
Target Start/End: Complemental strand, 8395 - 8293
Alignment:
Q  343 aaatctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaac 439  Q
    ||||||||||||| |||||||| ||| ||||||| ||||||||| |||| | ||  ||||||||   ||||||||||| ||| |||||||||||||||||    
T  8395 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 8296  T
Q  440 ttt 442  Q
    |||    
T  8295 ttt 8293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 343 - 442
Target Start/End: Original strand, 30584 - 30686
Alignment:
Q  343 aaatctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaac 439  Q
    ||||||||||||| |||||||| ||| ||||||| ||||||||| |||| | ||  ||||||||   ||||||||||| ||| |||||||||||||||||    
T  30584 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 30683  T
Q  440 ttt 442  Q
    |||    
T  30684 ttt 30686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 32268667 - 32268614
Alignment:
Q  332 gcttctcggtcaaatctctcgttttccattgaaactctcatcacttaatctctc 385  Q
    ||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||    
T  32268667 gcttctctgtcaaatctctcgttttccattgaaactcacgtcactcaatctctc 32268614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 457
Target Start/End: Original strand, 41900426 - 41900546
Alignment:
Q  340 gtcaaatctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattac 436  Q
    |||||||||||| |||||||||||||||| ||||||| || |||||  ||||  ||  ||| |||||   |||||| |||||||| ||| |||| |||||    
T  41900426 gtcaaatctctcattttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattac 41900525  T
Q  437 aactttaacctcattcacttg 457  Q
    |||||| |||||  |||||||    
T  41900526 aactttgacctctctcacttg 41900546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 382
Target Start/End: Original strand, 41886532 - 41886581
Alignment:
Q  333 cttctcggtcaaatctctcgttttccattgaaactctcatcacttaatct 382  Q
    |||||||| |||||||||  |||||||||||||||| ||||||| |||||    
T  41886532 cttctcggccaaatctctaattttccattgaaactcacatcactcaatct 41886581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 41886296 - 41886336
Alignment:
Q  93 tatttacctgatgaatgttgggaaagtatcttcaaattcct 133  Q
    |||||||||||||| ||||||||| || |||||||||||||    
T  41886296 tatttacctgatgagtgttgggaatgtgtcttcaaattcct 41886336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 51763325 - 51763370
Alignment:
Q  343 aaatctctcgttttccattgaaactctcatcacttaatctctccaa 388  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||    
T  51763325 aaatctctcgtttcccattgaaactcacatcacttaatctctccaa 51763370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 51120325 - 51120372
Alignment:
Q  88 atttttatttacctgatgaatgttgggaaagtatcttcaaattcctca 135  Q
    |||| |||||||||||||| ||||||||| || |||||||||||||||    
T  51120325 atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 51120372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 535
Target Start/End: Original strand, 51763487 - 51763529
Alignment:
Q  493 tactcattgctgaatgtttccctttgcttgaagaactcgacct 535  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||    
T  51763487 tactcattgcggaatgtttcccattgctcgaagaactcgacct 51763529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 340 - 448
Target Start/End: Original strand, 45244780 - 45244891
Alignment:
Q  340 gtcaaatctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattac 436  Q
    ||||||||||||  || ||||||||| |||| |||||  |||||||| ||||  |||||||||||||   |||||||| |||||||||||||| |||||     
T  45244780 gtcaaatctctcagttaccattgaaaatctcgtcactctatctctccgaccaaagcaccattcccgcgaatgggttgcaagctttctcccaaactattag 45244879  T
Q  437 aactttaacctc 448  Q
    || ||| |||||    
T  45244880 aaatttgacctc 45244891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 45244521 - 45244570
Alignment:
Q  88 atttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaac 137  Q
    |||| |||||||||||||| ||||||||| || |||| ||||||||||||    
T  45244521 atttctatttacctgatgagtgttgggaatgtgtcttgaaattcctcaac 45244570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 442
Target Start/End: Original strand, 1036620 - 1036648
Alignment:
Q  414 cgagctttctcccaaaatattacaacttt 442  Q
    |||||||||||||||||||||||||||||    
T  1036620 cgagctttctcccaaaatattacaacttt 1036648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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