View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11672_low_30 (Length: 241)
Name: NF11672_low_30
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11672_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8404806 - 8404585
Alignment:
| Q |
1 |
tccacttaagtcctgaaggatcatgatttcccttttaacatcctcaatttctttctttcttgttagctttcgtctcgaaatggacttacaagcatagttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8404806 |
tccacttaagtcctgaaggatcatgatttcccttttaacatcctcaatttctttctttcttgttagctttcgtctcgaaatggacttacaagcatagttt |
8404707 |
T |
|
| Q |
101 |
cttccggtggcattttcggtacaaagataagtgacaccaaattgacccctccctagttcctttccaatactatagagtgtcttcatgtcaatgtatggcc |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8404706 |
cttccagtggcattttcggtacaaagataagtgacaccaaattgacccctccctagttcctttccaatactatagagtgtcttcatgtcaatgtatggcc |
8404607 |
T |
|
| Q |
201 |
ttcctaatattggttgatgatg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
8404606 |
ttcctaatattggttgatgatg |
8404585 |
T |
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