View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11672_low_38 (Length: 211)

Name: NF11672_low_38
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11672_low_38
NF11672_low_38
[»] chr7 (5 HSPs)
chr7 (19-198)||(35611833-35612012)
chr7 (74-198)||(3614589-3614714)
chr7 (74-152)||(5569121-5569199)
chr7 (19-85)||(3614508-3614574)
chr7 (19-85)||(5569214-5569280)
[»] scaffold1903 (2 HSPs)
scaffold1903 (74-198)||(910-1034)
scaffold1903 (19-85)||(1049-1115)
[»] chr4 (2 HSPs)
chr4 (74-198)||(9981839-9981948)
chr4 (19-85)||(9981963-9982029)
[»] chr3 (1 HSPs)
chr3 (59-129)||(33129725-33129795)
[»] chr2 (1 HSPs)
chr2 (141-191)||(15480886-15480936)


Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 35612012 - 35611833
Alignment:
Q  19 ttaactaccgctaaatacttttcttcaattttttaggtacagagaaccaacccaatcttcaatttccctgctacattcacatattcacattcatattctt 118  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35612012 ttaactaccgctgaatacttttctttaattttttaggtactgagaaccaacccaatgttcaatttccctgctacattcacatattcacattcatattctt 35611913  T
Q  119 tcctctaccttctctttctaaccattctctttctaatatgctacaaaaatcatcttcttcatccttaccttattcttctc 198  Q
    ||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  35611912 tcctctgacttctctttctaaccattctctttctaatatgctaaaaaaatcatcttcttcatccttaccttattattctc 35611833  T

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Target: chr7; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 74 - 198
Target Start/End: Original strand, 3614589 - 3614714
Alignment:
Q  74 tcttcaatttccct-gctacattcacatattcacattcatattctttcctctaccttctctttctaaccattctctttctaatatgctacaaaaatcatc 172  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||    
T  3614589 tcttcaatttcccttgctacattcacatattcacattcatattctttcctttaccttctatttctaacgattctctttctaatatgctacaaaaatcatc 3614688  T
Q  173 ttcttcatccttaccttattcttctc 198  Q
    |||||||||||||||||||| |||||    
T  3614689 ttcttcatccttaccttattattctc 3614714  T

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Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 5569199 - 5569121
Alignment:
Q  74 tcttcaatttccctgctacattcacatattcacattcatattctttcctctaccttctctttctaaccattctctttct 152  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5569199 tcttcaatttccctactacattcacatattcacattcatattctttcctctaccttctctttctaaccattctctttct 5569121  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 3614508 - 3614574
Alignment:
Q  19 ttaactaccgctaaatacttttcttcaattttttaggtacagagaaccaacccaatcttcaatttcc 85  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3614508 ttaactaccgctaaatacttttcttcaattttttaggtgcagagaaccaacccaatcttcaatttcc 3614574  T

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Target: chr7; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 5569280 - 5569214
Alignment:
Q  19 ttaactaccgctaaatacttttcttcaattttttaggtacagagaaccaacccaatcttcaatttcc 85  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5569280 ttaactaccgctgaatacttttcttcaattttttaggtacagagaaccaacccaatcttcaatttcc 5569214  T

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Target: scaffold1903 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 74 - 198
Target Start/End: Complemental strand, 1034 - 910
Alignment:
Q  74 tcttcaatttccctgctacattcacatattcacattcatattctttcctctaccttctctttctaaccattctctttctaatatgctacaaaaatcatct 173  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1034 tcttcaatttccctgtaacattcacatattcacattcatattctttcctctaccttctctttctaaccattctctttctaatatgctacaaaaatcatct 935  T
Q  174 tcttcatccttaccttattcttctc 198  Q
    ||||||||| ||||||||| |||||    
T  934 tcttcatccataccttattattctc 910  T

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Target: scaffold1903; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 1115 - 1049
Alignment:
Q  19 ttaactaccgctaaatacttttcttcaattttttaggtacagagaaccaacccaatcttcaatttcc 85  Q
    |||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  1115 ttaactaccgctgaatacttttcttcaattttttaagtacaaagaaccaacccaatcttcaatttcc 1049  T

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Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 74 - 198
Target Start/End: Complemental strand, 9981948 - 9981839
Alignment:
Q  74 tcttcaatttccctgctacattcacatattcacattcatattctttcctctaccttctctttctaaccattctctttctaatatgctacaaaaatcatct 173  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||    
T  9981948 tcttcaatttccatgctacattcacatattcacattcatattctttcctctaccttctcttt---------------ctaatatgctacaaaaatcatct 9981864  T
Q  174 tcttcatccttaccttattcttctc 198  Q
    ||||||||||||||||||| |||||    
T  9981863 tcttcatccttaccttattattctc 9981839  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 9982029 - 9981963
Alignment:
Q  19 ttaactaccgctaaatacttttcttcaattttttaggtacagagaaccaacccaatcttcaatttcc 85  Q
    |||||| ||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9982029 ttaactgccgctgaatatttttcttcaatttttaaggtacagagaaccaacccaatcttcaatttcc 9981963  T

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Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 33129725 - 33129795
Alignment:
Q  59 agagaaccaacccaatcttcaatttccctgctacattcacatattcacattcatattctttcctctacctt 129  Q
    |||| ||||||||| | |||||||||||||||||||||||| ||||||||||||||||||| | |||||||    
T  33129725 agagtaccaacccattgttcaatttccctgctacattcacacattcacattcatattctttacgctacctt 33129795  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 15480936 - 15480886
Alignment:
Q  141 cattctctttctaatatgctacaaaaatcatcttcttcatccttaccttat 191  Q
    ||||||||||||||||||| ||||| ||| || ||||||||||||||||||    
T  15480936 cattctctttctaatatgcaacaaacatcttcctcttcatccttaccttat 15480886  T

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