View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11672_low_5 (Length: 536)
Name: NF11672_low_5
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11672_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 11 - 522
Target Start/End: Complemental strand, 9351646 - 9351135
Alignment:
| Q |
11 |
agagagacttatgatagtagttgtgcagcgaaaaccgtggtggcaagagggaacaacggagaggatgacgagaggcaacaaaaaattaagggaacaacgg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
9351646 |
agagagacttatgatagtagttgtgcagcgaaaaccgtggtggcaagagggaacaacggagaggatgacaagaggcaacaaaaaatagagggaacaacgg |
9351547 |
T |
|
| Q |
111 |
aaaaatgttcaaatggtggttgattgtggaagtcatgagctaataagtgtagatgacacggtttcagagtatagaagagaattttcagtcaataacatcc |
210 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9351546 |
aaaaacgttcaaatggtggttgattgtggaagtcatgaactaataagtgtagatgacacggtttcagagtatagaagagaattttcagtcagtaacatcc |
9351447 |
T |
|
| Q |
211 |
attctagactgcaaattctctttcattattgtgttttttgataaaatataacaattagnnnnnnnnnnnnnnnnnnngttgtgaatgggtgaaaccgttc |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9351446 |
attctagactgcaaattctctttcattattgtgttttttgataaaatataacaattagaaaaagaaaagaaaaaatagttgtgaatgggtgaaaccgttc |
9351347 |
T |
|
| Q |
311 |
atgtgcattagtcgtgctattggctctcgtgccttatttatataatctttaattaataaagaaaaagtctgatataaagatagtgatgcgaaaatataaa |
410 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9351346 |
gtgtgcattagtcgtgctattggctctcgtgccttatttatataatctttaattaataaagaaaaagtctgatataaagatagtgatgcgaaaatataaa |
9351247 |
T |
|
| Q |
411 |
tgcccaaaagtttttatggttgaaagttgtgaaaagctcgtcagaattttgttatgtttaccttttgattagagatc-ttatcttggtttgcaaagaaac |
509 |
Q |
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| T |
9351246 |
tgccc-aaagtttttatggttgaaagttgtgaaaagctcgtcagaattttattatgtttaccttttgattagagatctttctcttggtttgcaaagaaac |
9351148 |
T |
|
| Q |
510 |
agtacaatgtttt |
522 |
Q |
| |
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||||||||||||| |
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| T |
9351147 |
agtacaatgtttt |
9351135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 10 - 522
Target Start/End: Complemental strand, 9321330 - 9320818
Alignment:
| Q |
10 |
cagagagacttatgatagtagttgtgcagcgaaaaccgtggtggcaagagggaacaacggagaggatgacgagaggcaacaaaaaattaagggaacaacg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| || ||||||||||||||| | ||| ||||||| |
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| T |
9321330 |
cagagagacttatgatagtagttgtgcaacgaaaaccgtggtggcaagagagaacaacggagaggacgatgagaggcaacaaaaattagaggcaacaacg |
9321231 |
T |
|
| Q |
110 |
gaaaaatgttcaaatggtggttgattgtggaagtcatgagctaataagtgtagatgacacggtttcagagtatagaagagaattttcagtcaataacatc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
9321230 |
gaaaaatgttcaaatggtggttgattgtggaagtcatgagctaataagtgtagatgacacggttttagagtatagaagagaattttcagtcagtaacatc |
9321131 |
T |
|
| Q |
210 |
cattctagactgcaaattctctttcattattgtgttttttgataaaatataacaattagnnnnnnnnnnnnnnnnnnn-gttgtgaatgggtgaaaccgt |
308 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9321130 |
cattctagactacaaattctctttcattattgtgttttttgataaaatataacaattagaaaaagaaaagaaaaaaaaagttgtgaatgggtgaaaccgt |
9321031 |
T |
|
| Q |
309 |
tcatgtgcattagtcgtgctattggctctcgtgccttatttatataatctttaattaataaagaaaaagtctgatataaagatagtgatgcgaaaatata |
408 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9321030 |
tcgtgtgcattagtcgtgctattggctctcgtgccttatttatataatctttaattaataaagaaaaagtctgatataaagatagtgatgcgaaaatata |
9320931 |
T |
|
| Q |
409 |
aatgcccaaaagtttttatggttgaaagttgtgaaaagctcgtcagaattttgttatgtttaccttttgattagagatcttatcttggtttgcaaagaaa |
508 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9320930 |
aatgccc-aaagtttttatggttgaaagttgtgaaaagctcgtcagaattttattatgtttaccttttgattagagatcttctcttggtttgcaaagaaa |
9320832 |
T |
|
| Q |
509 |
cagtacaatgtttt |
522 |
Q |
| |
|
|||||||||||||| |
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|
| T |
9320831 |
cagtacaatgtttt |
9320818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 16 - 508
Target Start/End: Original strand, 9253731 - 9254201
Alignment:
| Q |
16 |
gacttatgatagtagttgtgcagcgaaaaccgtggtggcaagagggaacaacggagaggatgacgagaggcaacaaaaaattaagggaacaacggaaaaa |
115 |
Q |
| |
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||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| |||||| |
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| T |
9253731 |
gacttgtgatagtagttttgcagcgaaa-ccgtggtggcaagagggaacaacggagacgaagacgagaggcaacaac-----------------gaaaaa |
9253812 |
T |
|
| Q |
116 |
tgttcaaatggtggttgattgtggaagtcatgagctaataagtgtagatgacacggtttcagagtatagaagagaattttcagtcaataacatccattct |
215 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||| |||||| |||||||||||| |
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| T |
9253813 |
cattctaatggtggttgattgtggaagtcatgtgctaataagtgtagatgacacg-tttcagagtatagaaatttttttgcagtcagtaacatccattca |
9253911 |
T |
|
| Q |
216 |
agactgcaaattctctttcattattgtgttttttgataaaatataacaattagnnnnnnnnnnnnnnnnnnn--gttgtgaatgggtgaaaccgttcatg |
313 |
Q |
| |
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|||||| ||||||||||||||||||| || ||||||||||||||||||||||| |||||| | ||||||||||||| | |
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| T |
9253912 |
agactgaaaattctctttcattattgcgtgttttgataaaatataacaattagaaaaacaaaagaaaaaaaaaagttgtgcgttggtgaaaccgttc--g |
9254009 |
T |
|
| Q |
314 |
tgcattagtcgtgctattggctctcgtgccttatttatataatctttaattaataaagaaaaagtctgatataaagatagtgatgcgaaaatataaatgc |
413 |
Q |
| |
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|||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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|
| T |
9254010 |
tgcattagtcatgctattggctctcgtgcctaatatatataatctttaattaataaagaaaaaggctgatataaagatagtgatgcgaaaagataaatgc |
9254109 |
T |
|
| Q |
414 |
ccaaaagtttttatggttgaaagttgtgaaaagctcgtcagaattttgttatgtttaccttttgattagagatcttatcttggtttgcaaagaaa |
508 |
Q |
| |
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|| |||||||||||||||||||||||| ||||||| | |||||||| || |||||||||||| ||| ||||||| |||||||||||||||||| |
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| T |
9254110 |
cc-aaagtttttatggttgaaagttgtaaaaagctgattagaattttattgtgtttaccttttcatt--agatcttctcttggtttgcaaagaaa |
9254201 |
T |
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