View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11672_low_6 (Length: 468)
Name: NF11672_low_6
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11672_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 194 - 454
Target Start/End: Original strand, 4322440 - 4322700
Alignment:
| Q |
194 |
caaggccaaatgtgagatcagattacttggtcgatcaatggcaattaggttggggaaaaatccatggatcaagaaaaatattcaaaatcaaaatatcgaa |
293 |
Q |
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| T |
4322440 |
caaggccaaatgtgagatcagattatttggtcgatcaatggcaattaggttggggaaaaatccatggatcaagaaaaatattcaaaatcagaatatcgaa |
4322539 |
T |
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| Q |
294 |
ttaatccttttatttagcagaaaaaatttgattaattcttatcaaacaagtaaaatgtacatgcaacgatgaagctttatttaattaagatatatgaaga |
393 |
Q |
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| T |
4322540 |
ttaatccttttatttagcagaattttttttattaattcttatcaaacaagtaaaatgtacatgcaacgcataagctttatttaattaagatatatgaaga |
4322639 |
T |
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| Q |
394 |
aaatatacgtgaccttatatcctctttcaatgtatttgatagcaacaagttctcctgtctt |
454 |
Q |
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| T |
4322640 |
aaatatacttgaccttatatcctctttcaatgtatttgatagcaacaagttctcctgtctt |
4322700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 15 - 169
Target Start/End: Original strand, 4322252 - 4322406
Alignment:
| Q |
15 |
cacacctaatcctaagaagtactcgaagtgttgaataagatcatcgggggacacaaacacccaacccaccacctagctaactgataccaaacccgaagga |
114 |
Q |
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| T |
4322252 |
cacacctaatcctaagaagtactcgaagtgttgaataagatcatcgggggacacaaacacccaacccaccacctagctaactgataccaaacccgaagga |
4322351 |
T |
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| Q |
115 |
gtggcagaaaatatatagatgtaaactacatagtaatagcacaatgagatcatat |
169 |
Q |
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| T |
4322352 |
gtggcagaaaatatatagatgtaaactacatagtaataacacaatgagatcatat |
4322406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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