View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11672_low_7 (Length: 456)
Name: NF11672_low_7
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11672_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Original strand, 47430455 - 47430881
Alignment:
| Q |
18 |
attttgacgcattaattaatatatattagtgttgcattgcagataaagcttgtaaaatggctgtggattgtggaaaaggaaagtgtgtcgttaggtcaaa |
117 |
Q |
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| T |
47430455 |
attttgacgcattaattaatatatattagtgttgcattgcagataaagcttgtaaaatggctgtggattgtggaaaaggaaagtgtgtcgttaggtcaaa |
47430554 |
T |
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| Q |
118 |
ccacaaacatccatttaagttcgtctgtaaatgtgaacctggttggaagcaaatcaaagcgggtccaaaacatatgttccttccaaaatcatgtgtcatc |
217 |
Q |
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| T |
47430555 |
ccacaaacatccatttaagttcgtctgtaaatgtgaacctggttggaagcaaatcaaagcgggtccaaaacatatgttccttccaaaagcatgtgtcatc |
47430654 |
T |
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| Q |
218 |
cctgaatctgaatgtgaatttcactc---tctctctttcttaatgtcatatatttgtttgtcatcagcattagagtagtatatgtttgttaacacggtga |
314 |
Q |
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| T |
47430655 |
cctgaatctgaatgtgaatttcactctgatctctctttcttaatgtcatatatttgtttgtcatcagcattagagtagtatatgtttgttaacacggtga |
47430754 |
T |
|
| Q |
315 |
ctcactatgattttgcataagttaccaagtgtagctttttaaaaatcattgtggatcgctgtgattttggtaaatctacgatgttaccaaacatccgttt |
414 |
Q |
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| T |
47430755 |
ctcactatgattttgcagaagctaccaagtgtagctttttaaaaatcattgtggatcgccgtggttttggaaaatctacgatcttaccaaacatccattt |
47430854 |
T |
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| Q |
415 |
gattactttgtcatctatttctttcat |
441 |
Q |
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| T |
47430855 |
gattactttgtcatctatttctttcat |
47430881 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 32028281 - 32028232
Alignment:
| Q |
322 |
tgattttgcataagttaccaagtgtagctttttaaaaatcattgtggatc |
371 |
Q |
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| T |
32028281 |
tgattttgcataagctataaagtgtagcttttgaaaaatcatagtggatc |
32028232 |
T |
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