View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11672_low_9 (Length: 421)
Name: NF11672_low_9
Description: NF11672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11672_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 92 - 409
Target Start/End: Original strand, 24811158 - 24811475
Alignment:
| Q |
92 |
tataaaaacagtttgaatttattatacataagcacttaattaagttgcttaactatgatacataccagaagctgctccatggcattaggacattgagtta |
191 |
Q |
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| T |
24811158 |
tataaaaacagtttgaatttattatacataagcacttaattaagttgcttaactatgatacataccagaagctgctccatggcattaggacattgagtta |
24811257 |
T |
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| Q |
192 |
ggaaatagactgcaaaaagcattgtttttgtggtagtttcattgccagcaaaaagaagattgatgatgaagtctgcaacagcatcatctggcaaactatc |
291 |
Q |
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| T |
24811258 |
gaaaatagactgcaaaaagcattgtttttgtggtagtttcattgccagcaaaaagaagattgatgatgaagtctgcaacagcatcatctggcaaactatc |
24811357 |
T |
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| Q |
292 |
ttcctctattagtcttccaagtacaccattattaccttctgttggaggaccattttgtctctggacctctataatcttgtttattttacttatgattttc |
391 |
Q |
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| T |
24811358 |
ttcctctattagtcttccaagtacaccattattaccttcttttggaggaccattttgtctctggacctctatgatcttgtttattttacttatgattttc |
24811457 |
T |
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| Q |
392 |
tctcttgcctgatgtcca |
409 |
Q |
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| T |
24811458 |
tctcttgcctgatatcca |
24811475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 24811061 - 24811144
Alignment:
| Q |
19 |
cttatagaagcag-cttatgacacggccataagctgatttcagcatatatttccataatctctacaaggtagcttataaaaaca |
101 |
Q |
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| T |
24811061 |
cttatagaagccggcttatgacacggccataagctgatttcagcatatatttccataagctctacaaggtagcttataaaaaca |
24811144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 20672825 - 20672744
Alignment:
| Q |
31 |
gcttatgacacggccataagctgatttcagcatatatttccataatctctacaaggtagcttataaaaacagtttgaatttatt |
114 |
Q |
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| T |
20672825 |
gcttatgacatgttcataagctgttttcagcttatttt--cataagctctccaggatagcttataaaaacagtttgactttatt |
20672744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 8187480 - 8187520
Alignment:
| Q |
65 |
tatttccataatctctacaaggtagcttataaaaacagttt |
105 |
Q |
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| T |
8187480 |
tatttccataatctctccatggtagcttatgaaaacagttt |
8187520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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