View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11673_high_1 (Length: 510)
Name: NF11673_high_1
Description: NF11673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11673_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 4 - 491
Target Start/End: Original strand, 4631683 - 4632171
Alignment:
| Q |
4 |
ttttggaaaattttgttgtagtggaatggattattgtaggtaaacacatatttattaatttggttaaaaggaaactgattcaaatcatacatattacatg |
103 |
Q |
| |
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||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||| |
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| T |
4631683 |
ttttggaaaattttgttgtagaggaatgacttattgtaggcaaacacatatttattaatttggttaaaagaaaactgatttaaatcatacatactacatg |
4631782 |
T |
|
| Q |
104 |
catataattccgaaaaactgtaaac-ataacatacgaaattcaagatgggtctatcatgcttgttaacttagattacgaagattctaaagtacttgtgct |
202 |
Q |
| |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4631783 |
catataattccgaaaatctgtaaacgataacatacgaaattcaagatgggtctaccatgcttgttaacttagattacgaagattctaaagtacttgtgct |
4631882 |
T |
|
| Q |
203 |
tgatggattataaaattacatttccaaaatgatctgaaaaatcaaggattaatattttcccttcactttgttgtttatgcaaaggaggtgaatcaaatat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4631883 |
tgatggattataaaattacatttccaaaatgatctgaaaaatcaaggattaatattttcccttcactttgttgtttatgcaaaggaggtgaatcaaatat |
4631982 |
T |
|
| Q |
303 |
gctcttttcatgcttgttagaagaaacaaacccggaaaccgaagctgctccattaatatgtttcaaagctgatccatgacttgattttcccttagaattc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4631983 |
gctcttttcatgcttgttagaagaaacaaacctggaaaccgaagctgctccattaatatgtttcaaagctgatccatgacttgattttcccttagaattc |
4632082 |
T |
|
| Q |
403 |
aaattctccttgttcatcaaactcttatcatctttcaagtcaatcacagaccactcctcttcagaattctctttcaaatctttcgattt |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |||| | |||||||||||||||||| |||||||||||||| |
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| T |
4632083 |
aaattctccttgttcatcaaactcttatcatctttcaaatcaatcacataccatttctcttcagaattctcttttaaatctttcgattt |
4632171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 27002485 - 27002587
Alignment:
| Q |
8 |
ggaaaattttgttgtagtggaatggattattgtaggtaaacacatatttattaatttggttaaaaggaaactgattcaaatcatacatattacatgcata |
107 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||| || ||||||| |||| ||||| || ||||||| |||||||| | || || | |||||| ||||||| |
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| T |
27002485 |
ggaaaattttgttatagaggaatagattattacagacaaacacagatttgttaatatgcttaaaagcaaactgatcccaaacaaagatattatatgcata |
27002584 |
T |
|
| Q |
108 |
taa |
110 |
Q |
| |
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||| |
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|
| T |
27002585 |
taa |
27002587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 257 - 491
Target Start/End: Original strand, 48250199 - 48250433
Alignment:
| Q |
257 |
ttttcccttcactttgttgtttatgcaaaggaggtgaatcaaatatgctcttttcatgcttgttagaagaaacaaacccggaaaccgaagctgctccatt |
356 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| |||||||||||||||| || |
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|
| T |
48250199 |
ttttcccatcactttgttgtttatgcaaaggaggtgaatcaaatatactcttttcatgtttgtttgaagatacaaacccaaaaaccgaagctgctccttt |
48250298 |
T |
|
| Q |
357 |
aatatgtttcaaagctgatccatgacttgattttcccttagaattcaaattctccttgttcatcaaactcttatcatctttcaagtcaatcacagaccac |
456 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48250299 |
aatctgtttcaaagctgatccatgacttgattttcccttagaattcaaattctccttgttcatcaaactcttatcatctttcaagtcaatcacagaccac |
48250398 |
T |
|
| Q |
457 |
tcctcttcagaattctctttcaaatctttcgattt |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
48250399 |
tcctcttcagaattctctttcaaatctttcgattt |
48250433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 27892693 - 27892811
Alignment:
| Q |
11 |
aaattttgttgtagtggaatggattattgtaggtaaacacatatttattaatttggttaaaaggaaactgattcaaatcatacatattacatgcatataa |
110 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27892693 |
aaattttgttgtagaggaacggattattgtaggcaaacacagatttgttaatttggttaaaaggaaactgattcaaatcatacatattacatgcatataa |
27892792 |
T |
|
| Q |
111 |
ttccgaaaaactgtaaaca |
129 |
Q |
| |
|
|||||||||| ||||||| |
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|
| T |
27892793 |
atccgaaaaacggtaaaca |
27892811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 12074987 - 12075215
Alignment:
| Q |
11 |
aaattttgttgtagtggaatggattattgtaggtaaacacatatttattaatttggttaaaaggaaactgattcaaatcatacatattacatgcatataa |
110 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| |||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12074987 |
aaattttgttatagaggaatggattattgtaggcaaacacatatttgttaattcgtttaaaaggaaactgattcaaatcatacatattacatgtatataa |
12075086 |
T |
|
| Q |
111 |
ttccgaaaaactgtaaac-ataacatacgaaattcaagatgggtctatcatgcttgttaacttagattacgaagattctaaagtacttgtgcttgatgga |
209 |
Q |
| |
|
||| || ||| ||||| |||||||||||||||||||||||||||| |||||| ||||||||||| ||| |||||||||||||||||| | |||| ||| |
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|
| T |
12075087 |
atccaaataaccataaacgataacatacgaaattcaagatgggtctaccatgctagttaacttagagtacaaagattctaaagtacttgcgtttgaagga |
12075186 |
T |
|
| Q |
210 |
ttataaaattacatttccaaaatgatctga |
239 |
Q |
| |
|
|| ||||||||||||||||||| ||||||| |
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| T |
12075187 |
tt-taaaattacatttccaaaacgatctga |
12075215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 875511 - 875454
Alignment:
| Q |
70 |
aaaggaaactgattcaaatcatacatattacatgcatataattccgaaaaactgtaaa |
127 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
875511 |
aaaggatactaattcaaatcatacatattacatgcatataaatccgaaaaactgtaaa |
875454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 29737555 - 29737498
Alignment:
| Q |
182 |
agattctaaagtacttgtgcttgatggattataaaattacatttccaaaatgatctga |
239 |
Q |
| |
|
||||| ||||||||| |||| | |||||||||||||||||||||||||||||| |||| |
|
|
| T |
29737555 |
agattttaaagtactcgtgcattatggattataaaattacatttccaaaatgacctga |
29737498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 272633 - 272756
Alignment:
| Q |
4 |
ttttggaaaattttgttgtagtggaatggattattgtaggtaaacacatatttattaatttggttaaaaggaaactgattcaaatcatacatattacatg |
103 |
Q |
| |
|
||||||||||| |||||||| | || ||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
272633 |
ttttggaaaatattgttgtaaagaaacggattattgtaggcaaacacatatttattaatttggttaaaaggatactaattcaaatcatacatattacatg |
272732 |
T |
|
| Q |
104 |
catataattccgaaaaactgtaaa |
127 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
272733 |
catataaatccgaaaaactgtaaa |
272756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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