View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11673_high_3 (Length: 305)
Name: NF11673_high_3
Description: NF11673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11673_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 47705493 - 47705209
Alignment:
| Q |
1 |
ggttacaagttgagctcaccaattccaagcaaagacccaaataatcgttctatacttgctttctttgctggaggggaacatggtatgattagaaagacat |
100 |
Q |
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| T |
47705493 |
ggttacaagttgagctcaccaattccaagcaaagaatcaaataatcgttctatacttgctttctttgctggaggggaacatggtatgattagaaagacat |
47705394 |
T |
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| Q |
101 |
tactagatcaatggaaaggaaaagataaagaagtactagtgtatgaatatcttccnnnnnnncttaagtactttaaactcatgggaaaaagcaagttttg |
200 |
Q |
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| T |
47705393 |
tactagatcaatggaaaggaaaagataaagaagtactagtgtatgaatatcttccaaaaaaacttaagtactttaaactcatgggaaaaagcaagttttg |
47705294 |
T |
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| Q |
201 |
cttgtgtccaagtggctatgaagtagctagccctagacttgtggagtctataaacactggatgtgtccctgtgattgtttcggat |
285 |
Q |
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| T |
47705293 |
cttgtgtccaagtggctatgaagtagctagccctagacttgtggagtctataaacactggatgtgtccctgtgattgtttcggat |
47705209 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 44629169 - 44629206
Alignment:
| Q |
190 |
agcaagttttgcttgtgtccaagtggctatgaagtagc |
227 |
Q |
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| T |
44629169 |
agcaagttttgtttgtgtccaagtggttatgaagtagc |
44629206 |
T |
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