View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11673_low_2 (Length: 340)

Name: NF11673_low_2
Description: NF11673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11673_low_2
NF11673_low_2
[»] chr4 (8 HSPs)
chr4 (107-310)||(21665836-21666039)
chr4 (107-310)||(21674600-21674803)
chr4 (152-310)||(21661988-21662146)
chr4 (152-310)||(21670752-21670910)
chr4 (27-109)||(21665720-21665802)
chr4 (27-109)||(21674484-21674566)
chr4 (28-75)||(21661328-21661375)
chr4 (28-75)||(21670092-21670139)
[»] chr1 (1 HSPs)
chr1 (151-240)||(19979566-19979655)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 107 - 310
Target Start/End: Original strand, 21665836 - 21666039
Alignment:
Q  107 caaaggcatgctgacattggttaatctttttgtaatnnnnnnnntttgacaggtgatggcattggaattgggggcatacaaaatcagagtgaattcaata 206  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21665836 caaaggcatgctgacattggttaatctttttgtaataaaaaaaatttgacaggtgatggcattggaattgggggcatacaaaatcagagtgaattcaata 21665935  T
Q  207 tcaccaggacttttcaaatctgaaattactgaaagtttgatgaagaaagattggctaaacaatgtagccataagaacagtgccattaagagaatggggga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21665936 tcaccaggacttttcaaatctgaaattactgaaagtttgatgaagaaagattggctaaacaatgtagccataagaacagtgccattaagagaatggggga 21666035  T
Q  307 cttc 310  Q
    ||||    
T  21666036 cttc 21666039  T

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Target: chr4; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 107 - 310
Target Start/End: Original strand, 21674600 - 21674803
Alignment:
Q  107 caaaggcatgctgacattggttaatctttttgtaatnnnnnnnntttgacaggtgatggcattggaattgggggcatacaaaatcagagtgaattcaata 206  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21674600 caaaggcatgctgacattggttaatctttttgtaataaaaaaaatttgacaggtgatggcattggaattgggggcatacaaaatcagagtgaattcaata 21674699  T
Q  207 tcaccaggacttttcaaatctgaaattactgaaagtttgatgaagaaagattggctaaacaatgtagccataagaacagtgccattaagagaatggggga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21674700 tcaccaggacttttcaaatctgaaattactgaaagtttgatgaagaaagattggctaaacaatgtagccataagaacagtgccattaagagaatggggga 21674799  T
Q  307 cttc 310  Q
    ||||    
T  21674800 cttc 21674803  T

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Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 152 - 310
Target Start/End: Original strand, 21661988 - 21662146
Alignment:
Q  152 ttgacaggtgatggcattggaattgggggcatacaaaatcagagtgaattcaatatcaccaggacttttcaaatctgaaattactgaaagtttgatgaag 251  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21661988 ttgacaggtaatggcattggaattgggggcacacaaaatcagagtgaattcaatatcaccaggacttttcaaatctgaaattactgaaagtttgatgaag 21662087  T
Q  252 aaagattggctaaacaatgtagccataagaacagtgccattaagagaatgggggacttc 310  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||    
T  21662088 aaagattggctaaacaatgtagccaagagaacagtgccattaagagaatggggcacttc 21662146  T

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Target: chr4; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 152 - 310
Target Start/End: Original strand, 21670752 - 21670910
Alignment:
Q  152 ttgacaggtgatggcattggaattgggggcatacaaaatcagagtgaattcaatatcaccaggacttttcaaatctgaaattactgaaagtttgatgaag 251  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21670752 ttgacaggtaatggcattggaattgggggcacacaaaatcagagtgaattcaatatcaccaggacttttcaaatctgaaattactgaaagtttgatgaag 21670851  T
Q  252 aaagattggctaaacaatgtagccataagaacagtgccattaagagaatgggggacttc 310  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||    
T  21670852 aaagattggctaaacaatgtagccaagagaacagtgccattaagagaatggggcacttc 21670910  T

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Target: chr4; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 21665720 - 21665802
Alignment:
Q  27 tatcaagaagctcacatccattaattcttgttgctatgtgtgatgaatgggattcttttaatcaagttgtgaatgttcatcaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21665720 tatcaagaagctcacatccattaattcttgttgctatgtgtgatgaatgggattcttttaatcaagttgtgaatattcatcaa 21665802  T

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Target: chr4; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 21674484 - 21674566
Alignment:
Q  27 tatcaagaagctcacatccattaattcttgttgctatgtgtgatgaatgggattcttttaatcaagttgtgaatgttcatcaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21674484 tatcaagaagctcacatccattaattcttgttgctatgtgtgatgaatgggattcttttaatcaagttgtgaatattcatcaa 21674566  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 21661328 - 21661375
Alignment:
Q  28 atcaagaagctcacatccattaattcttgttgctatgtgtgatgaatg 75  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  21661328 atcaagaagctaacaaccattaattcttgttgctatgtgtgatgaatg 21661375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 21670092 - 21670139
Alignment:
Q  28 atcaagaagctcacatccattaattcttgttgctatgtgtgatgaatg 75  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  21670092 atcaagaagctaacaaccattaattcttgttgctatgtgtgatgaatg 21670139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 19979566 - 19979655
Alignment:
Q  151 tttgacaggtgatggcattggaattgggggcatacaaaatcagagtgaattcaatatcaccaggacttttcaaatctgaaattactgaaa 240  Q
    |||||||||| ||||| ||||||||||| ||  ||||||| ||||||||||||||||| || ||| |||||||||||||||| |||||||    
T  19979566 tttgacaggtcatggctttggaattgggtgctcacaaaattagagtgaattcaatatctcctggaattttcaaatctgaaatcactgaaa 19979655  T

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