View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11674_high_2 (Length: 379)

Name: NF11674_high_2
Description: NF11674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11674_high_2
NF11674_high_2
[»] chr6 (10 HSPs)
chr6 (136-379)||(34633886-34634129)
chr6 (6-130)||(32034340-32034464)
chr6 (6-70)||(12783905-12783969)
chr6 (6-78)||(29061323-29061395)
chr6 (6-68)||(29065791-29065853)
chr6 (6-68)||(29074804-29074866)
chr6 (6-68)||(29079568-29079630)
chr6 (6-68)||(29107377-29107439)
chr6 (6-70)||(13401547-13401611)
chr6 (42-91)||(34634170-34634219)
[»] chr2 (13 HSPs)
chr2 (155-379)||(26857863-26858086)
chr2 (6-70)||(2920464-2920528)
chr2 (6-70)||(24512228-24512292)
chr2 (8-70)||(41500184-41500246)
chr2 (6-69)||(40679545-40679608)
chr2 (6-70)||(2648178-2648242)
chr2 (6-58)||(16580559-16580611)
chr2 (6-72)||(29093779-29093842)
chr2 (6-70)||(43491170-43491234)
chr2 (6-69)||(26858175-26858238)
chr2 (8-109)||(28472108-28472214)
chr2 (12-70)||(10365746-10365804)
chr2 (6-70)||(39393098-39393162)
[»] chr7 (14 HSPs)
chr7 (6-77)||(21188374-21188445)
chr7 (6-70)||(46863292-46863356)
chr7 (8-70)||(30355189-30355251)
chr7 (6-77)||(34139925-34139996)
chr7 (6-70)||(41047838-41047902)
chr7 (6-68)||(42682057-42682119)
chr7 (6-70)||(17838711-17838776)
chr7 (9-70)||(28980123-28980184)
chr7 (6-59)||(48269713-48269766)
chr7 (6-70)||(28115480-28115544)
chr7 (6-70)||(36394886-36394950)
chr7 (6-70)||(40587722-40587786)
chr7 (10-70)||(43686859-43686919)
chr7 (63-130)||(12080396-12080460)
[»] chr4 (16 HSPs)
chr4 (6-77)||(34154376-34154447)
chr4 (6-103)||(51429277-51429374)
chr4 (6-76)||(34530743-34530813)
chr4 (6-74)||(39588123-39588191)
chr4 (6-70)||(56138313-56138377)
chr4 (6-76)||(56304905-56304975)
chr4 (8-77)||(6283417-6283486)
chr4 (6-70)||(44561278-44561342)
chr4 (6-70)||(958542-958606)
chr4 (6-72)||(42885508-42885576)
chr4 (10-70)||(1041996-1042056)
chr4 (8-59)||(28081530-28081582)
chr4 (9-72)||(243296-243359)
chr4 (41-80)||(37865193-37865232)
chr4 (55-130)||(48806460-48806535)
chr4 (55-130)||(38368206-38368278)
[»] chr1 (21 HSPs)
chr1 (6-77)||(27487614-27487685)
chr1 (6-80)||(14174859-14174933)
chr1 (6-70)||(29763167-29763231)
chr1 (6-70)||(42572705-42572769)
chr1 (6-73)||(44596893-44596960)
chr1 (6-71)||(13147556-13147621)
chr1 (6-129)||(26637204-26637336)
chr1 (6-77)||(49426741-49426813)
chr1 (56-130)||(4208371-4208445)
chr1 (8-70)||(49927451-49927513)
chr1 (6-59)||(13972134-13972187)
chr1 (6-70)||(6434809-6434873)
chr1 (20-70)||(49395664-49395714)
chr1 (61-130)||(49395578-49395647)
chr1 (6-70)||(29435034-29435097)
chr1 (6-76)||(35526983-35527057)
chr1 (6-56)||(29709259-29709309)
chr1 (55-108)||(7942971-7943024)
chr1 (6-59)||(51269010-51269063)
chr1 (10-58)||(4208454-4208502)
chr1 (6-59)||(36908642-36908699)
[»] chr8 (11 HSPs)
chr8 (6-72)||(18441389-18441455)
chr8 (6-73)||(3395924-3395991)
chr8 (6-77)||(22547497-22547568)
chr8 (8-70)||(41858073-41858135)
chr8 (10-70)||(26451541-26451601)
chr8 (6-70)||(41274653-41274717)
chr8 (8-76)||(37779707-37779773)
chr8 (34-73)||(38871831-38871870)
chr8 (55-130)||(40740881-40740956)
chr8 (8-70)||(42602521-42602583)
chr8 (61-130)||(7120875-7120944)
[»] chr3 (23 HSPs)
chr3 (6-80)||(19454299-19454373)
chr3 (6-70)||(34694382-34694446)
chr3 (8-70)||(55207613-55207675)
chr3 (6-70)||(51696522-51696586)
chr3 (6-70)||(52570514-52570578)
chr3 (8-70)||(41803059-41803121)
chr3 (8-70)||(51402348-51402410)
chr3 (6-70)||(43476253-43476317)
chr3 (6-70)||(43568927-43568991)
chr3 (6-70)||(45101796-45101860)
chr3 (6-70)||(55385198-55385262)
chr3 (6-68)||(7245155-7245217)
chr3 (6-70)||(2271260-2271325)
chr3 (6-70)||(36134384-36134449)
chr3 (10-59)||(41137780-41137829)
chr3 (6-70)||(13896824-13896888)
chr3 (6-66)||(41577140-41577200)
chr3 (6-70)||(49609444-49609508)
chr3 (6-68)||(4004750-4004813)
chr3 (17-70)||(24703374-24703427)
chr3 (63-130)||(32593143-32593210)
chr3 (6-72)||(34648150-34648218)
chr3 (6-59)||(49219739-49219792)
[»] chr5 (10 HSPs)
chr5 (8-73)||(42865754-42865819)
chr5 (6-70)||(542738-542802)
chr5 (6-70)||(18307315-18307379)
chr5 (6-70)||(35564322-35564386)
chr5 (6-70)||(25497572-25497636)
chr5 (6-70)||(11346068-11346133)
chr5 (6-70)||(3600398-3600462)
chr5 (6-70)||(8537226-8537291)
chr5 (20-70)||(20192414-20192464)
chr5 (56-130)||(35564236-35564310)
[»] scaffold0176 (1 HSPs)
scaffold0176 (6-77)||(850-921)
[»] scaffold0199 (1 HSPs)
scaffold0199 (6-70)||(12335-12400)
[»] scaffold0192 (1 HSPs)
scaffold0192 (6-70)||(18847-18911)


Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 136 - 379
Target Start/End: Complemental strand, 34634129 - 34633886
Alignment:
Q  136 ccaaatcaaatgtatcagcaacaattttcacatcaaaatgagtggaaagagtnnnnnnnngttaccgagccatcatcatcgactcttcaacttcgtatag 235  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||||||||||        ||||  || |||||||||||||||||||||||||||||||    
T  34634129 ccaaatcaaatctatcaacaacaattttcacatcaaaatcagtggaaagagtaaaaaaaagttagtgacccatcatcatcgactcttcaacttcgtatag 34634030  T
Q  236 ccaagaggaaaaattcacgcatatatataacaccaaacccacccgctaacaaaacaattttggcgctcacattttacaacctctcaacttccttctctcc 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34634029 ccaagaggaaaaattcacgcatatatataacaccaaacccacccgctaacaaaacaattttggcgctcacattttacaacctctcaacttccttctctcc 34633930  T
Q  336 ctaacagaaaatgaatcgccaaccgcaaccaccaccaccttcca 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  34633929 ctaacagaaaatgaatcgccaaccgcaaccaccaccaccttcca 34633886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 32034340 - 32034464
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccgattccttcaaaatttggcagctaactac 105  Q
    ||||| ||||||||||| | |||  || ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| ||| ||||| |    
T  32034340 tgagacgaataatggataagagatcttctgccagatttgtagcagaagatcatcggcagttaactgcagccggttccttcaaaatttgtcagttaactgc 32034439  T
Q  106 cgaatgatatttggataaattactc 130  Q
    |||| | |||||| |||||||||||    
T  32034440 cgaagggtatttgaataaattactc 32034464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 12783905 - 12783969
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||| |||| |||||||||||||||||||||||| ||||||||||    
T  12783905 tgagatgaataatggatgagagagctttttccagatttgtagcagaagatcctcggcagttaact 12783969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 29061395 - 29061323
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccga 78  Q
    ||||||||||||||||||| |||| || | |||||||||||||||||||||||| | ||||||||||||||||    
T  29061395 tgagatgaataatggatgagagagcttctaccagatttgtagcagaagatcctcggaagttaactgcagccga 29061323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 29065853 - 29065791
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaa 68  Q
    ||||||||||||||||||| |||| ||  |||||||||||||||||||||||||  |||||||    
T  29065853 tgagatgaataatggatgagagagcttccgccagatttgtagcagaagatcctcgacagttaa 29065791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 29074866 - 29074804
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaa 68  Q
    ||||||||||||||||||| |||| ||  |||||||||||||||||||||||||  |||||||    
T  29074866 tgagatgaataatggatgagagagcttccgccagatttgtagcagaagatcctcgacagttaa 29074804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 29079630 - 29079568
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaa 68  Q
    ||||||||||||||||||| |||| ||  |||||||||||||||||||||||||  |||||||    
T  29079630 tgagatgaataatggatgagagagcttccgccagatttgtagcagaagatcctcgacagttaa 29079568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 29107439 - 29107377
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaa 68  Q
    ||||||||||||||||||| |||| ||  |||||||||||||||||||||||||  |||||||    
T  29107439 tgagatgaataatggatgagagagcttccgccagatttgtagcagaagatcctcgacagttaa 29107377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 13401611 - 13401547
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||| || || || |||||||||||||||||||| | ||||||||    
T  13401611 tgagatgaataatggatgagagagcttctgtcatatttgtagcagaagatcctcggtagttaact 13401547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 34634219 - 34634170
Alignment:
Q  42 ttgtagcagaagatcctctgcagttaactgcagccgattccttcaaaatt 91  Q
    ||||||||||||||||||  ||||||||||||  ||||||||||||||||    
T  34634219 ttgtagcagaagatcctcgacagttaactgcaatcgattccttcaaaatt 34634170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 155 - 379
Target Start/End: Complemental strand, 26858086 - 26857863
Alignment:
Q  155 aacaattttcacatcaaaatgagtggaaagagtnnnnnnnngttaccgagccatcatcatcgactcttcaacttcgtatagccaagaggaaaaattcacg 254  Q
    ||||||||||||||||||||||||| |||||||        ||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26858086 aacaattttcacatcaaaatgagtgaaaagagtaaaaaaaagttactga-ccatcatcatcgactcttcaacttcgtatagccaagaggaaaacttcacg 26857988  T
Q  255 catatatataacaccaaacccacccgctaacaaaacaattttggcgctcacattttacaacctctcaacttccttctctccctaacagaaaatgaatcgc 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26857987 catatatataacaccaaacccacccgctaacaaaacaattttggcgctcacattttacaacctctcaacttccttctctccctaacagaaaatgaatcgc 26857888  T
Q  355 caaccgcaaccaccaccaccttcca 379  Q
    |||||||||||||||||||||||||    
T  26857887 caaccgcaaccaccaccaccttcca 26857863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 2920464 - 2920528
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  2920464 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 2920528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 24512292 - 24512228
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  24512292 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 24512228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 41500184 - 41500246
Alignment:
Q  8 agatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  41500184 agatgaataatggatgagagagcttatgccagatttgtagcagaagatcctcggcagttaact 41500246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 40679545 - 40679608
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaac 69  Q
    ||||||||||||||||||| |||| || | |||||||||||||||||||||||| |||||||||    
T  40679545 tgagatgaataatggatgagagaggttcttccagatttgtagcagaagatcctcggcagttaac 40679608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 2648242 - 2648178
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||||||||||| || ||| ||||||    
T  2648242 tgagatgaataattgatgagagagtttctgccagatttgtagcagaagatcatcggcaattaact 2648178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 16580611 - 16580559
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcct 58  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||| |||||    
T  16580611 tgagatgaataatggatgagagaacttttgccagatttgtagcagaaaatcct 16580559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 29093779 - 29093842
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgc 72  Q
    |||||||||||||   ||| |||| || |||||||||||||||||||||||||| ||||||||||||    
T  29093779 tgagatgaataat---tgagagagcttctgccagatttgtagcagaagatcctcggcagttaactgc 29093842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 43491234 - 43491170
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||| || |||||||||| || |||||||| ||| ||||||||||    
T  43491234 tgagatgaataatggatgagagagcttctgccagatttataacagaagattctcggcagttaact 43491170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 26858238 - 26858175
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaac 69  Q
    ||||||||||||| ||||| ||| ||| || || |||||||||||||||||||| |||||||||    
T  26858238 tgagatgaataattgatgagagaatttctgtcacatttgtagcagaagatcctcggcagttaac 26858175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 28472214 - 28472108
Alignment:
Q  8 agatgaataatggatgaaag-agtttttgccagattt-gtag--cagaagatcctctgcagttaactgcagccgattccttcaaaattt-ggcagctaac 102  Q
    ||||||||||||||||| || || || |||||||||| ||||  |||||||||||| |||||||||||||||||  |  |||||||||| ||||| ||||    
T  28472214 agatgaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcagcagttaactgcagccggatttttcaaaatttcggcagttaac 28472115  T
Q  103 taccgaa 109  Q
    |||||||    
T  28472114 taccgaa 28472108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 10365746 - 10365804
Alignment:
Q  12 gaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||| |||| || |||||||||||||||| ||||||||| ||| ||||||    
T  10365746 gaataatggatgagagagcttatgccagatttgtagcaaaagatcctcggcatttaact 10365804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 39393162 - 39393098
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||| || |  ||||||||||| |||||||||||  |||||||||    
T  39393162 tgagatgaataatggatgagagagcttctatcagatttgtagtagaagatcctcgacagttaact 39393098  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 21188374 - 21188445
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccg 77  Q
    ||||||||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||||||    
T  21188374 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactgcagccg 21188445  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 46863292 - 46863356
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||| || ||||||||||    
T  46863292 tgagatgaataatggatgaaagagcttctgccagatttgtagcagaagatcttcggcagttaact 46863356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 30355189 - 30355251
Alignment:
Q  8 agatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  30355189 agatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 30355251  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 34139996 - 34139925
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccg 77  Q
    ||||||||||||||||| | |||| || ||||||||||||||  |||||||||| |||||||||||||||||    
T  34139996 tgagatgaataatggataagagagcttctgccagatttgtagaggaagatcctcggcagttaactgcagccg 34139925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 41047902 - 41047838
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||| ||   |||||||||||||||||||||||| ||||||||||    
T  41047902 tgagatgaataatggatgagagagcttcctccagatttgtagcagaagatcctcggcagttaact 41047838  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 42682119 - 42682057
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaa 68  Q
    ||||||||||||||||||| |||  || ||| |||||||||||||||||||||| ||||||||    
T  42682119 tgagatgaataatggatgagagaacttatgctagatttgtagcagaagatcctcggcagttaa 42682057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 17838776 - 17838711
Alignment:
Q  6 tgagatgaataatggatgaaag-agtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| || || || ||||||||||||||||||||||| || ||||||||||    
T  17838776 tgagatgaataatggatgagaggagattctgccagatttgtagcagaagatcgtcggcagttaact 17838711  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 28980123 - 28980184
Alignment:
Q  9 gatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    |||||||||||||||| |||| || || |||||||||||||||| |||||| ||||||||||    
T  28980123 gatgaataatggatgagagagcttctgtcagatttgtagcagaaaatcctcggcagttaact 28980184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 48269766 - 48269713
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctc 59  Q
    ||||||||||||||||||| |||  ||||| |||||||||||||||||||||||    
T  48269766 tgagatgaataatggatgagagaacttttgtcagatttgtagcagaagatcctc 48269713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 28115480 - 28115544
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||| || ||| ||||||||||||||||| ||||  |||||||||    
T  28115480 tgagatgaataatggatgagagagcttatgctagatttgtagcagaagaccctcaacagttaact 28115544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 36394886 - 36394950
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    |||||| ||||| |||||| |||| || |||||||||||||||||||||||||| | ||||||||    
T  36394886 tgagattaataacggatgagagagcttctgccagatttgtagcagaagatcctcggtagttaact 36394950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 40587786 - 40587722
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||| || |  ||||||| ||||| ||||||||| ||||||||||    
T  40587786 tgagatgaataatggatgagagagcttctttcagatttatagcataagatcctcggcagttaact 40587722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 43686859 - 43686919
Alignment:
Q  10 atgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||| |||| || || |||||||||||||||| || ||| ||||||||||    
T  43686859 atgaataatggatgagagagcttatgtcagatttgtagcagaaaattctcggcagttaact 43686919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 12080460 - 12080396
Alignment:
Q  63 agttaactgcagccgattccttcaaaatttggcagctaactaccgaatgatatttggataaattactc 130  Q
    |||||||||||||||||||| |   |||| ||||| |||||||||||  | |||||||||||||||||    
T  12080460 agttaactgcagccgattccat---aattcggcagttaactaccgaagaacatttggataaattactc 12080396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 34154376 - 34154447
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccg 77  Q
    ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  34154376 tgagatgaataatagatgagagagcttctgccagatttgtagcagaagatcctctgcagttaactgcagccg 34154447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 51429277 - 51429374
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccgattccttcaaaatttggcagctaact 103  Q
    ||||||||||||||||||| |||| || | ||||||||||||||||||||||||  |||||||||||||||| || || ||||||| ||||| |||||    
T  51429277 tgagatgaataatggatgagagagcttcttccagatttgtagcagaagatcctcgacagttaactgcagccggtttctccaaaattcggcagttaact 51429374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 34530743 - 34530813
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagcc 76  Q
    ||||||||||||||||||| |||| || ||||| |||||||||||||||||||| ||||||||||||||||    
T  34530743 tgagatgaataatggatgagagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagcc 34530813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 39588191 - 39588123
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcag 74  Q
    ||||||||||||||||||| |||| || ||||| |||||||||||||||||||| ||||||||||||||    
T  39588191 tgagatgaataatggatgagagagcttctgccatatttgtagcagaagatcctcggcagttaactgcag 39588123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 56138377 - 56138313
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  56138377 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 56138313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 56304975 - 56304905
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagcc 76  Q
    ||||||||||||||||||| |||| || ||||||||||||||||||| |||||| ||| ||||||||||||    
T  56304975 tgagatgaataatggatgagagagcttctgccagatttgtagcagaaaatcctcggcaattaactgcagcc 56304905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 6283417 - 6283486
Alignment:
Q  8 agatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccg 77  Q
    ||||||||||||||||| |||| ||  |||||||||| |||||||||||||| |||||||||||||||||    
T  6283417 agatgaataatggatgagagagcttcggccagatttgaagcagaagatcctcggcagttaactgcagccg 6283486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 44561278 - 44561342
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||| || |||||||||||||||||| ||||||| ||||||||||    
T  44561278 tgagatgaataatggatgagagagcttctgccagatttgtagcagacgatcctcggcagttaact 44561342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 958542 - 958606
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||| ||||||||||||| |||| || |||| ||||||||||||||||||||| ||||||||||    
T  958542 tgagaagaataatggatgagagagcttctgccggatttgtagcagaagatcctcggcagttaact 958606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 42885576 - 42885508
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccaga--tttgtagcagaagatcctctgcagttaactgc 72  Q
    ||||||||||||||||||| |||| || |||||||  |||||||||||||||| || ||||||||||||    
T  42885576 tgagatgaataatggatgagagagcttctgccagatttttgtagcagaagatcatcggcagttaactgc 42885508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 1042056 - 1041996
Alignment:
Q  10 atgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||| |||| |||| |||| || |||||||||||||| ||||||||||| ||||||||||    
T  1042056 atgaacaatgaatgagagagcttatgccagatttgtagtagaagatcctcggcagttaact 1041996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 28081582 - 28081530
Alignment:
Q  8 agatgaataatggatgaaag-agtttttgccagatttgtagcagaagatcctc 59  Q
    ||||||||||||||||| || || || ||||||||||||||||||||||||||    
T  28081582 agatgaataatggatgagaggagattctgccagatttgtagcagaagatcctc 28081530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 243296 - 243359
Alignment:
Q  9 gatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgc 72  Q
    |||||||||||  ||| |||| || ||||||||||||| ||||||||||||  |||||||||||    
T  243296 gatgaataatgagtgagagagcttctgccagatttgtaacagaagatcctcgacagttaactgc 243359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 80
Target Start/End: Complemental strand, 37865232 - 37865193
Alignment:
Q  41 tttgtagcagaagatcctctgcagttaactgcagccgatt 80  Q
    ||||||||||||||||||| ||||||||||||| ||||||    
T  37865232 tttgtagcagaagatcctcggcagttaactgcaaccgatt 37865193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 48806535 - 48806460
Alignment:
Q  55 tcctctgcagttaactgcagccgattccttcaaaatttggcagctaactaccgaatgatatttggataaattactc 130  Q
    ||||| ||||||||||||||||| ||| || ||| || | ||| ||||| ||||| | ||||||||||||||||||    
T  48806535 tcctcggcagttaactgcagccggttctttaaaatttcgacagttaactgccgaaaggtatttggataaattactc 48806460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 38368278 - 38368206
Alignment:
Q  55 tcctctgcagttaactgcagccgattccttcaaaatttggcagctaactaccgaatgatatttggataaattactc 130  Q
    ||||| ||||||||||||||||| ||   ||| |||| ||||| ||||| ||||| || |||||||||||||||||    
T  38368278 tcctcggcagttaactgcagccggtt---tcataattcggcagttaactgccgaaggacatttggataaattactc 38368206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 27487614 - 27487685
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccg 77  Q
    ||||||||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||||||    
T  27487614 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactgcagccg 27487685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 14174859 - 14174933
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccgatt 80  Q
    ||||||||||||||||||| |||| || |||||||||| ||||||||||||||| ||||||||||||||||||||    
T  14174859 tgagatgaataatggatgagagagcttctgccagatttttagcagaagatcctcggcagttaactgcagccgatt 14174933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 29763167 - 29763231
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  29763167 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 29763231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 42572705 - 42572769
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  42572705 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 42572769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 44596960 - 44596893
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgca 73  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||| |||||||||||||    
T  44596960 tgagatgaataatggatgagagagtttctgccaaatttgtagcagaagatactcagcagttaactgca 44596893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 13147621 - 13147556
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactg 71  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||  ||||||||||    
T  13147621 tgagatgaataatggatgagagagtttttaccagatttgtagcagaagatcatcgacagttaactg 13147556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 26637204 - 26637336
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcc---------tctgcagttaactgcagccgattccttcaaaatttggca 96  Q
    ||||||||||||||||||| |||| || ||||||||||||||||||||||||         || ||||||||||||||||| || |||||||||| | ||    
T  26637204 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggtaacttcggcagttaactgcagccggtttcttcaaaattcgaca 26637303  T
Q  97 gctaactaccgaatgatatttggataaattact 129  Q
    | ||||||||||    ||||| |||||||||||    
T  26637304 gataactaccgagaagtatttagataaattact 26637336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 49426813 - 49426741
Alignment:
Q  6 tgagatgaataatggatgaaag-agtttttgccagatttgtagcagaagatcctctgcagttaactgcagccg 77  Q
    ||||||||||||||||||| || || || |||||||||||||||||||||||||| |||||||| ||||||||    
T  49426813 tgagatgaataatggatgagaggagattctgccagatttgtagcagaagatcctcggcagttaattgcagccg 49426741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 4208445 - 4208371
Alignment:
Q  56 cctctgcagttaactgcagccgattccttcaaaatttggcagctaactaccgaatgatatttggataaattactc 130  Q
    |||| ||||||||||||||||| ||||||||||||| ||||| ||||| ||||| ||||||||  ||||||||||    
T  4208445 cctcggcagttaactgcagccggttccttcaaaattcggcagttaactgccgaaggatatttgagtaaattactc 4208371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 49927451 - 49927513
Alignment:
Q  8 agatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||| |||| || |||||||||||||||||||||||||| | ||||||||    
T  49927451 agatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggtagttaact 49927513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 13972187 - 13972134
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctc 59  Q
    ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||    
T  13972187 tgagatgaataatagatgagagagcttctgccagatttgtagcagaagatcctc 13972134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 6434873 - 6434809
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| || | || | |||||||||||||||||||||||  ||||||||||    
T  6434873 tgagatgaataatggatgagagtgcttctaccagatttgtagcagaagatccttggcagttaact 6434809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 49395714 - 49395664
Alignment:
Q  20 gatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  49395714 gatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 49395664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 49395647 - 49395578
Alignment:
Q  61 gcagttaactgcagccgattccttcaaaatttggcagctaactaccgaatgatatttggataaattactc 130  Q
    ||||||||||||||||| ||| ||||||||| |||   ||||||||||| | |||||||| |||||||||    
T  49395647 gcagttaactgcagccggttctttcaaaattcggctattaactaccgaagggtatttggacaaattactc 49395578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 29435097 - 29435034
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||  || ||||| |||||||||| || |||||||||||||||||    
T  29435097 tgagatgaataatggatgagagaacttctgccaaatttgtagca-aaaatcctctgcagttaact 29435034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 35526983 - 35527057
Alignment:
Q  6 tgagatgaataatggat--gaaagagtttttgccaga--tttgtagcagaagatcctctgcagttaactgcagcc 76  Q
    |||||||||||||||||  || |||| || ||||| |  |||||||||||||||||||| |||||||||||||||    
T  35526983 tgagatgaataatggatgagatagaggttctgccatatttttgtagcagaagatcctctacagttaactgcagcc 35527057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 29709259 - 29709309
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatc 56  Q
    |||||||||||||||||||||||| || ||| |||||| ||||| ||||||    
T  29709259 tgagatgaataatggatgaaagagcttctgctagatttatagcaaaagatc 29709309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 7943024 - 7942971
Alignment:
Q  55 tcctctgcagttaactgcagccgattccttcaaaatttggcagctaactaccga 108  Q
    ||||| ||||||||||||||||||||| || ||| |||||||| ||||| ||||    
T  7943024 tcctcggcagttaactgcagccgattcttttaaattttggcagttaactgccga 7942971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 51269063 - 51269010
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctc 59  Q
    |||||||||||||| |||| |||| || ||| | ||||||||||||||||||||    
T  51269063 tgagatgaataatgaatgagagagcttctgctaaatttgtagcagaagatcctc 51269010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 4208502 - 4208454
Alignment:
Q  10 atgaataatggatgaaagagtttttgccagatttgtagcagaagatcct 58  Q
    ||||||||||||||| |||| || ||  |||||||||||||||||||||    
T  4208502 atgaataatggatgagagagcttctggtagatttgtagcagaagatcct 4208454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 36908699 - 36908642
Alignment:
Q  6 tgagatgaataatggatgaa----agagtttttgccagatttgtagcagaagatcctc 59  Q
    ||||||||||||||||||||    |||| || |||||||||||||||||||| |||||    
T  36908699 tgagatgaataatggatgaatgagagagcttctgccagatttgtagcagaagctcctc 36908642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 18441389 - 18441455
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgc 72  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||    
T  18441389 tgagatgaataatggatgagagagtttctgccagatttgtagcagaagatcctcggcagttaactgc 18441455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 3395991 - 3395924
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgca 73  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| |||||||||||||    
T  3395991 tgagatgaataatggatgagagagtttctgccatatttgtagcagaagatcctcggcagttaactgca 3395924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 22547568 - 22547497
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccg 77  Q
    ||||||||||||| ||||| |||| || |||||||||||||| ||||||||||| | |||||||||||||||    
T  22547568 tgagatgaataattgatgagagagcttctgccagatttgtagtagaagatcctcggtagttaactgcagccg 22547497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 41858073 - 41858135
Alignment:
Q  8 agatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||| |||| || ||||||||||||||||||||||||||  |||||||||    
T  41858073 agatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcgacagttaact 41858135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 26451601 - 26451541
Alignment:
Q  10 atgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||| ||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  26451601 atgaataatagatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 26451541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 41274717 - 41274653
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||| || |||||||||| ||| ||||||| ||| ||||||||||    
T  41274717 tgagatgaataatggatgagagagcttctgccagatttatagtagaagattctcggcagttaact 41274653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 37779773 - 37779707
Alignment:
Q  8 agatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagcc 76  Q
    |||||||||||||||||  ||| || || |||||||||||||||| ||||||  |||||||||||||||    
T  37779773 agatgaataatggatga--gagcttctgtcagatttgtagcagaatatcctcgacagttaactgcagcc 37779707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 38871870 - 38871831
Alignment:
Q  34 tgccagatttgtagcagaagatcctctgcagttaactgca 73  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  38871870 tgccagatttgtagcagaagatccttggcagttaactgca 38871831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 40740956 - 40740881
Alignment:
Q  55 tcctctgcagttaactgcagccgattccttcaaaatttggcagctaactaccgaatgatatttggataaattactc 130  Q
    ||||| ||||||||||||||||| ||| || ||| || ||||| |||||  |||| ||||||||| ||||||||||    
T  40740956 tcctcggcagttaactgcagccggttctttaaaatttcggcagttaactgtcgaaggatatttgggtaaattactc 40740881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 42602583 - 42602521
Alignment:
Q  8 agatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||| | |  || || |||||||||| |||||||||||| ||||||||||    
T  42602583 agatgaataatggatgagacaacttatgtcagatttgtatcagaagatcctcggcagttaact 42602521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 7120944 - 7120875
Alignment:
Q  61 gcagttaactgcagccgattccttcaaaatttggcagctaactaccgaatgatatttggataaattactc 130  Q
    |||| |||||||||||| || ||| ||||||  |||| ||||| ||||| ||||||| ||||||||||||    
T  7120944 gcagctaactgcagccggtttctttaaaattcagcagttaactgccgaaggatatttagataaattactc 7120875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 19454299 - 19454373
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccgatt 80  Q
    ||||||||||||||||||| |||| || |||||||||||||| ||||||||||| ||||||||||||| ||||||    
T  19454299 tgagatgaataatggatgagagagcttctgccagatttgtagtagaagatcctcggcagttaactgcaaccgatt 19454373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 34694382 - 34694446
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  34694382 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 34694446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 55207613 - 55207675
Alignment:
Q  8 agatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  55207613 agatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 55207675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 51696522 - 51696586
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||| || ||||||||||| |||||||||||||| ||||||||||    
T  51696522 tgagatgaataatggatgagagagcttctgccagatttgcagcagaagatcctcggcagttaact 51696586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 52570514 - 52570578
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    |||||||||||||| |||| ||||||| |||||||||||||| ||||||||||| ||||||||||    
T  52570514 tgagatgaataatgaatgagagagtttctgccagatttgtagtagaagatcctcggcagttaact 52570578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 41803121 - 41803059
Alignment:
Q  8 agatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||| |||| || |||||||||||||||| ||||||||| ||||||||||    
T  41803121 agatgaataatggatgagagagcttctgccagatttgtagcaaaagatcctcggcagttaact 41803059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 51402348 - 51402410
Alignment:
Q  8 agatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||| |||| || || ||||||||||||||||||||||| ||||||||||    
T  51402348 agatgaataatggatgagagagcttctgacagatttgtagcagaagatcctcggcagttaact 51402410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 43476317 - 43476253
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||| || || ||||||||||||| ||||||||| ||||||||||    
T  43476317 tgagatgaataatggatgagagagcttctgtcagatttgtagcaaaagatcctcggcagttaact 43476253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 43568991 - 43568927
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||| || || |||||||||| |||||||||||| ||||||||||    
T  43568991 tgagatgaataatggatgagagagcttctgtcagatttgtaacagaagatcctcagcagttaact 43568927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 45101796 - 45101860
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    |||||||||||||  |||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  45101796 tgagatgaataatatatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 45101860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 55385262 - 55385198
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    |||||| |||||||||||| |||| || ||||||||||||||||||||||||||  |||||||||    
T  55385262 tgagattaataatggatgagagagcttctgccagatttgtagcagaagatcctcgacagttaact 55385198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 7245217 - 7245155
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaa 68  Q
    ||||||||||||||||||| |||| || || ||||||||||||||||||| ||| ||||||||    
T  7245217 tgagatgaataatggatgagagagcttctgtcagatttgtagcagaagatactcggcagttaa 7245155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 2271260 - 2271325
Alignment:
Q  6 tgagatgaataatggatgaaag-agtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    |||||||||| |||||||| || || || |||||||||||||||||||||||||| ||||||||||    
T  2271260 tgagatgaattatggatgagaggagattctgccagatttgtagcagaagatcctcggcagttaact 2271325  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 36134449 - 36134384
Alignment:
Q  6 tgagatgaataatggatgaaag-agtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||| | || || || |||||||||||||||||||||||||| ||||||||||    
T  36134449 tgagatgaataatggataagaggagattctgccagatttgtagcagaagatcctcggcagttaact 36134384  T

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Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 41137829 - 41137780
Alignment:
Q  10 atgaataatggatgaaagagtttttgccagatttgtagcagaagatcctc 59  Q
    ||||||||||||||| |||| || ||||||||||||||||||||||||||    
T  41137829 atgaataatggatgagagagcttctgccagatttgtagcagaagatcctc 41137780  T

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Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 13896824 - 13896888
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||| || |||||||||||||| |||| ||| || ||||||||||    
T  13896824 tgagatgaataatggatgagagagcttctgccagatttgtagtagaaaatcttcggcagttaact 13896888  T

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Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 41577200 - 41577140
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagtt 66  Q
    ||||||| ||||||||||| |||| || ||| |||||||||||||||||||||| ||||||    
T  41577200 tgagatggataatggatgagagagcttctgcaagatttgtagcagaagatcctcggcagtt 41577140  T

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Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 49609508 - 49609444
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    |||||||||||||| || | |||| || |||||||||||||||||||| ||||| ||||||||||    
T  49609508 tgagatgaataatgaataagagagcttatgccagatttgtagcagaagttcctcggcagttaact 49609444  T

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Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 4004750 - 4004813
Alignment:
Q  6 tgagatgaataatggatgaaag-agtttttgccagatttgtagcagaagatcctctgcagttaa 68  Q
    ||||||||||||||||||| || || || |||||| ||||||||||||||||||| ||||||||    
T  4004750 tgagatgaataatggatgagaggagattctgccaggtttgtagcagaagatcctcggcagttaa 4004813  T

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Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 24703374 - 24703427
Alignment:
Q  17 atggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    |||||||| |||| || ||||||||||||||||||||||| || ||||||||||    
T  24703374 atggatgagagagcttctgccagatttgtagcagaagatcatcggcagttaact 24703427  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 32593143 - 32593210
Alignment:
Q  63 agttaactgcagccgattccttcaaaatttggcagctaactaccgaatgatatttggataaattactc 130  Q
    ||||||||||||||| ||| || ||| || | ||| ||||| ||||| ||||||||||||||||||||    
T  32593143 agttaactgcagccggttctttaaaatttcgacagttaactgccgaaagatatttggataaattactc 32593210  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 34648150 - 34648218
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccaga--tttgtagcagaagatcctctgcagttaactgc 72  Q
    ||||||||||||||||||| |||| || |||||||  ||||||||| ||||||||| ||| || |||||    
T  34648150 tgagatgaataatggatgagagagcttctgccagaattttgtagcataagatcctcagcaatttactgc 34648218  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 49219739 - 49219792
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctc 59  Q
    ||||||||||||||||||  |||| || || || ||||||||||||||||||||    
T  49219739 tgagatgaataatggatgggagagcttctgtcaaatttgtagcagaagatcctc 49219792  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 42865754 - 42865819
Alignment:
Q  8 agatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgca 73  Q
    ||||||||||||||||| |||| || |||||||||||||||||||||||||| ||| |||||||||    
T  42865754 agatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcaattaactgca 42865819  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 542738 - 542802
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||  || |||||||||||||||||||||||||| ||||||||||    
T  542738 tgagatgaataatggatgagagaacttctgccagatttgtagcagaagatcctcggcagttaact 542802  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 18307379 - 18307315
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| || | || |||||||||||||||||||||||||| ||||||||||    
T  18307379 tgagatgaataatggatgagagggcttctgccagatttgtagcagaagatcctcggcagttaact 18307315  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 35564386 - 35564322
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    |||| |||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  35564386 tgaggtgaataatggatgagagagcttatgccagatttgtagcagaagatcctcagcagttaact 35564322  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 25497636 - 25497572
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| |||| || |||| ||||||||||||||||| ||| ||||||||||    
T  25497636 tgagatgaataatggatgagagagcttctgcctgatttgtagcagaagattctcggcagttaact 25497572  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 11346133 - 11346068
Alignment:
Q  6 tgagatgaataatggatgaaag-agtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| || || || ||||||||||||||||||||||||||  |||||||||    
T  11346133 tgagatgaataatggatgagaggagattctgccagatttgtagcagaagatcctcgacagttaact 11346068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 3600462 - 3600398
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    |||||||||||||| ||||||||  || || ||||||||||||||||||||||| || |||||||    
T  3600462 tgagatgaataatgcatgaaagaacttctgtcagatttgtagcagaagatcctcggctgttaact 3600398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 8537291 - 8537226
Alignment:
Q  6 tgagatgaataatggatgaaag-agtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| || || || || |||||||||||||||| |||||| ||||||||||    
T  8537291 tgagatgaataatggatgagaggagattctggcagatttgtagcagaacatcctcggcagttaact 8537226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 20192464 - 20192414
Alignment:
Q  20 gatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||| |||| || |||||||||||||||||||||||||| ||| ||||||    
T  20192464 gatgagagagcttctgccagatttgtagcagaagatcctcggcatttaact 20192414  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 35564310 - 35564236
Alignment:
Q  56 cctctgcagttaactgcagccgattccttcaaaatttggcagctaactaccgaatgatatttggataaattactc 130  Q
    |||| ||| ||||||||||| | ||||||||||||| ||||| ||||| |||||  |||||||  ||||||||||    
T  35564310 cctcggcaattaactgcagctggttccttcaaaattcggcagttaactgccgaagaatatttgagtaaattactc 35564236  T

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Target: scaffold0176 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 921 - 850
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccg 77  Q
    ||||||||||||||||| | |||| || ||||||||||||||  |||||||||| |||||||||||||||||    
T  921 tgagatgaataatggataagagagcttctgccagatttgtagaggaagatcctcggcagttaactgcagccg 850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 12335 - 12400
Alignment:
Q  6 tgagatgaataatggatgaaag-agtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| || || || |||||||||||||||||||||||||| ||||||||||    
T  12335 tgagatgaataatggatgagagtagattctgccagatttgtagcagaagatcctcggcagttaact 12400  T

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Target: scaffold0192 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 18847 - 18911
Alignment:
Q  6 tgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 70  Q
    ||||||||||||||||||| | || || ||||||||||||||||||||||||||  |||||||||    
T  18847 tgagatgaataatggatgagaaagcttctgccagatttgtagcagaagatcctcgacagttaact 18911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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