View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11674_high_5 (Length: 254)
Name: NF11674_high_5
Description: NF11674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11674_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 19057153 - 19057379
Alignment:
| Q |
19 |
tgttttttgtctagcatgttctcattttcgtctacattattttaatggcaagatggttctacctacgtggttttgttaccacttctggaaggagatttca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057153 |
tgttttttgtctagcatgttctcattttcgtctacattattttaatggcaagatggttctacctacgtggttttgttaccacttctggaaggagatttca |
19057252 |
T |
|
| Q |
119 |
gggctgctcttcaggggaatgaaattgagatttgtgtcgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057253 |
gggctgctcttcaggggaatgaaattgagatttgtgtcgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttg |
19057352 |
T |
|
| Q |
219 |
tctgtgtaaattgtgtagtctctgctc |
245 |
Q |
| |
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||||||||||| ||||| ||||||||| |
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| T |
19057353 |
tctgtgtaaatcgtgtattctctgctc |
19057379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 50805035 - 50804809
Alignment:
| Q |
19 |
tgttttttgtctagcatgttctcattttcgtctacattattttaatggcaagatggttctacctacgtggttttgttaccacttctggaaggagatttca |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50805035 |
tgttttttgtctagcatgttctcattttcgtctacattattttaatggcaagatggttctacctacgtggttttgttaccacttctggaaggagatttca |
50804936 |
T |
|
| Q |
119 |
gggctgctcttcaggggaatgaaattgagatttgtgtcgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804935 |
gggctgctcttcaggggaatgaaattgagatttgtgttgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttg |
50804836 |
T |
|
| Q |
219 |
tctgtgtaaattgtgtagtctctgctc |
245 |
Q |
| |
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| T |
50804835 |
tctgtgtaaatcgtgtagtctctgctc |
50804809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 50870842 - 50871068
Alignment:
| Q |
19 |
tgttttttgtctagcatgttctcattttcgtctacattattttaatggcaagatggttctacctacgtggttttgttaccacttctggaaggagatttca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870842 |
tgttttttgtctagcatgttctcattttcgtctacattattttaatggcaagatggttctacctacgtggttttgttaccacttctggaaggagatttca |
50870941 |
T |
|
| Q |
119 |
gggctgctcttcaggggaatgaaattgagatttgtgtcgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870942 |
gggctgctcttcaggggaatgaaattgagatttgtgttgaaagtggtatgtactcttcgaacaacacaacagacaatcataaatttgttagtattttttg |
50871041 |
T |
|
| Q |
219 |
tctgtgtaaattgtgtagtctctgctc |
245 |
Q |
| |
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||||||||||| ||||||||||||||| |
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|
| T |
50871042 |
tctgtgtaaatcgtgtagtctctgctc |
50871068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 42348931 - 42349049
Alignment:
| Q |
67 |
caagatggttctacctacgtggttttgttaccacttctggaaggagatttcagggctgctcttcagggg---------aatgaaattgagatttgtgtcg |
157 |
Q |
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||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
42348931 |
caagatggttctacctacgcggttttgttacctcttttggaaggagatttcagggctgttcttcaggggaatgatcaaaatgaaattgagatttgtgtcg |
42349030 |
T |
|
| Q |
158 |
aaagtggtatgtactcttc |
176 |
Q |
| |
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||||||||||| ||||||| |
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| T |
42349031 |
aaagtggtatgcactcttc |
42349049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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