View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11674_low_1 (Length: 1006)

Name: NF11674_low_1
Description: NF11674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11674_low_1
NF11674_low_1
[»] chr4 (16 HSPs)
chr4 (18-628)||(28594882-28595496)
chr4 (209-625)||(32493298-32493705)
chr4 (623-869)||(28595675-28595925)
chr4 (678-870)||(32493895-32494087)
chr4 (234-447)||(28587496-28587712)
chr4 (233-454)||(28592663-28592884)
chr4 (740-870)||(28592181-28592311)
chr4 (937-1006)||(28595537-28595606)
chr4 (740-860)||(28587083-28587203)
chr4 (527-625)||(28587313-28587411)
chr4 (937-1003)||(32493752-32493818)
chr4 (22-95)||(32493130-32493206)
chr4 (28-90)||(28592984-28593046)
chr4 (937-1006)||(28592386-28592455)
chr4 (537-625)||(28592499-28592587)
chr4 (50-83)||(28587775-28587808)


Alignment Details
Target: chr4 (Bit Score: 541; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 18 - 628
Target Start/End: Original strand, 28594882 - 28595496
Alignment:
Q  18 acacatatgtatgcattctataaattcttgagaactcacatcctcttctccatcaaccaatatcatt----tcttcaacattctctcattctcatcaatc 113  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    ||||||||||||||  |||||||||||||    
T  28594882 acacatatgtatgcattctataaattcatgagaactcaaatcctcttctccatcaaccaatatcattaatttcttcaacattctc--attctcatcaatc 28594979  T
Q  114 tcgttaacaacaataatattacctttt-tcttccattatctgtgtgtcaagtaaaagaaaataattaattatattcaactcatattataaagtaattaat 212  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||  ||    
T  28594980 tcgttaacaacaataatattaccttttttcttccattatctgtgtatcaagtaaaagaaaataattaattatattcaactcatataataaagtaatatat 28595079  T
Q  213 taacattccagtttgcattcgatggcttttagaattacgactagttttattgtcacattggtgctactaagttcaatatgtgatgcacaattgtcttcta 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28595080 taacattccagtttgcattcgatggcttttagaattacgactagttttattgtcacattggtgctactaagttcaatatgtgatgcacaattgtcttcta 28595179  T
Q  313 cgttttacgatggtacatgccctaatgcattaagcactatcagaactgcaattcgtactgctgtctctaaggagcgtcgtatggctgcatctctcattcg 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28595180 cgttttacgatggtacatgccctaatgcattaagcactatcagaactgccattcgtactgctgtctctaaggagcgtcgtatggctgcatctctcattcg 28595279  T
Q  413 tcttcattttcatgattgttttgtccaggtaattagtatattaattctatacatgtattttgattaatcatataaagtattcattatgatcatattaatt 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28595280 tcttcattttcatgattgttttgtccaggtaattagtatattaattctatacatgtattttgattaatcatataaagtattcattatgatcatattaatt 28595379  T
Q  513 ag-ttaattgatcttaattaatttacagggttgtgatgcatcaattttgctagacgacacctccacaattgagagtgaaaagagtgcacttccaaatctt 611  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28595380 agtttaattgatcttaattaatttacagggttgtgatgcatcaattttgctagacgacacctccacaattgagagtgaaaagagtgcacttccaaatctt 28595479  T
Q  612 aactctgtaagaggttt 628  Q
    || ||||||||||||||    
T  28595480 aattctgtaagaggttt 28595496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 209 - 625
Target Start/End: Original strand, 32493298 - 32493705
Alignment:
Q  209 taattaacattccagtttgcattcgatggcttttagaattacgactagttttattgtcacattggtgctactaagttcaatatgtgatgcacaattgtct 308  Q
    ||||||| |||||||| ||||||| |||||||||||||||| || ||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  32493298 taattaatattccagtatgcattctatggcttttagaattatgattagttttgttgtcacattggtgctgctaagctcaatatgtgatgcacaattgtct 32493397  T
Q  309 tctacgttttacgatggtacatgccctaatgcattaagcactatcagaactgcaattcgtactgctgtctctaaggagcgtcgtatggctgcatctctca 408  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||  |||||||| ||||||||||| |||||||||||||||||||||||||    
T  32493398 tctacgttttacgatagtacatgccctaatgcactaagcactatcagaactgtgattcgtaccgctgtctctaaagagcgtcgtatggctgcatctctca 32493497  T
Q  409 ttcgtcttcattttcatgattgttttgtccaggtaattagtatattaattctatacatgtattttgattaatcatataaagtattcattatgatcatatt 508  Q
    |||||||||||||||||||||||||||||||||||||||||  || |                |||||||| ||||||||||||||||||||||||||||    
T  32493498 ttcgtcttcattttcatgattgttttgtccaggtaattagttcatga----------------ttgattaaccatataaagtattcattatgatcatatt 32493581  T
Q  509 a-attagttaatt-----gatctt-aattaatttacagggttgtgatgcatcaattttgctagacgacacctccacaattgagagtgaaaagagtgcact 601  Q
    | ||||||| |||     |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32493582 atattagtttattgataagatcttaaattaatttacagggttgtgatgcatcaattttgctagacgacacctccacaattgagagtgaaaagagtgcact 32493681  T
Q  602 tccaaatcttaactctgtaagagg 625  Q
    ||||||| ||||||||||||||||    
T  32493682 tccaaatattaactctgtaagagg 32493705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 623 - 869
Target Start/End: Complemental strand, 28595925 - 28595675
Alignment:
Q  623 aggtttacaaattagtcatatacacaaatataaagatttgcatgtttgnnnnnnn---tgggttagtgatgaacttaccagataaagtcaccatatcttt 719  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||           |||||||||||||||||||||||||||||| |||||||||||    
T  28595925 aggtttacaaattagtcatatacacaaatataaagatttccatgttttgaaaaaaaaatgggttagtgatgaacttaccagataaagtaaccatatcttt 28595826  T
Q  720 gagagtaagacctttattggtaaaatgggatataagagttgttagatcatctgtaaattttggaaggtctgaattggccaaac-ttttactagcaatggt 818  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28595825 gagagtaagacctttattggtaaaatgggatattagagttgttagatcatctgtaaattttggaaggtctgaattggccaaactttttactagcaatggt 28595726  T
Q  819 agagtctcttcttccaagttttaccgtccatgatggaccacccacctgcat 869  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28595725 agagtctcttcttccaagttttaccgtccatgatggaccacccacctgcat 28595675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 678 - 870
Target Start/End: Complemental strand, 32494087 - 32493895
Alignment:
Q  678 tgggttagtgatgaacttaccagataaagtcaccatatctttgagagtaagacctttattggtaaaatgggatataagagttgttagatcatctgtaaat 777  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  32494087 tgggtcagtgatgaacttaccagataaagtaaccatatctttgagagtaagacctttattggtaaaatgggctataagagttgttagatcatccgtaaat 32493988  T
Q  778 tttggaaggtctgaattggccaaacttttactagcaatggtagagtctcttcttccaagttttaccgtccatgatggaccacccacctgcatc 870  Q
    |||||||||||||||||||||  |||||| ||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  32493987 tttggaaggtctgaattggcctgacttttgctagcaacggtggagtctcttcttccgagttttaccgtccatgacggaccacccacctgcatc 32493895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 234 - 447
Target Start/End: Complemental strand, 28587712 - 28587496
Alignment:
Q  234 atggcttttagaattacgactagttttattgtcacattggtgctactaagttcaatat---gtgatgcacaattgtcttctacgttttacgatggtacat 330  Q
    ||||||| |||||| |  ||||||||| |||| ||||||||||| ||| |  ||||||   ||||||| ||||| |||||||| ||||| ||  |||| |    
T  28587712 atggcttatagaatgatcactagttttgttgtaacattggtgctgctaggcacaatatcatgtgatgcccaattatcttctacattttatgacagtactt 28587613  T
Q  331 gccctaatgcattaagcactatcagaactgcaattcgtactgctgtctctaaggagcgtcgtatggctgcatctctcattcgtcttcattttcatgattg 430  Q
    ||||||||||| ||||||| ||||||||| | |||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28587612 gccctaatgcactaagcaccatcagaacttcgattcgtactgcaatctctaaggagcgtcgtatggctgcatctctcattcgtcttcactttcatgattg 28587513  T
Q  431 ttttgtccaggtaatta 447  Q
    |||||| ||||||||||    
T  28587512 ttttgtgcaggtaatta 28587496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 233 - 454
Target Start/End: Complemental strand, 28592884 - 28592663
Alignment:
Q  233 gatggcttttagaattacgactagttttattgtcacattggtgctactaagttcaatatgtgatgcacaattgtcttctacgttttacgatggtacatgc 332  Q
    |||||||| |||||| |  ||||||||| || |||||||| |  | ||| |  ||||||||||||| ||  | |||||||| || |||||  ||||||||    
T  28592884 gatggcttatagaatgatcactagttttgttttcacattgattgttctaggcacaatatgtgatgcgcagctttcttctactttctacgacagtacatgc 28592785  T
Q  333 cctaatgcattaagcactatcagaactgcaattcgtactgctgtctctaaggagcgtcgtatggctgcatctctcattcgtcttcattttcatgattgtt 432  Q
    |||||||| ||||||||||| |||||| | |||||||||||||||||||||||| |||| ||||| |||||| ||||||| |||||||||||||| ||||    
T  28592784 cctaatgccttaagcactattagaacttcgattcgtactgctgtctctaaggagtgtcgcatggcggcatctgtcattcgccttcattttcatgactgtt 28592685  T
Q  433 ttgtccaggtaattagtatatt 454  Q
    ||||||| ||||||| ||||||    
T  28592684 ttgtccaagtaattactatatt 28592663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 740 - 870
Target Start/End: Original strand, 28592181 - 28592311
Alignment:
Q  740 taaaatgggatataagagttgttagatcatctgtaaattttggaaggtctgaattggccaaacttttactagcaatggtagagtctcttcttccaagttt 839  Q
    ||||||| |||||||||||||| ||||| || ||||||   |||||||| | ||||||||||||||| || ||  ||||||||||||| | |||||||||    
T  28592181 taaaatgagatataagagttgtaagatcgtccgtaaataacggaaggtcagtattggccaaacttttgcttgctgtggtagagtctctccgtccaagttt 28592280  T
Q  840 taccgtccatgatggaccacccacctgcatc 870  Q
    |||||||||||||||||||||||||||||||    
T  28592281 taccgtccatgatggaccacccacctgcatc 28592311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 937 - 1006
Target Start/End: Complemental strand, 28595606 - 28595537
Alignment:
Q  937 aacttacaacaaatgatgcatcacgtgctgctattgctacaatgtcagcacaagacacaactccaggaca 1006  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28595606 aacttacagcaaatgatgcatcacgtgccgctattgctacaatgtcagcacaagacacaactccaggaca 28595537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 740 - 860
Target Start/End: Original strand, 28587083 - 28587203
Alignment:
Q  740 taaaatgggatataagagttgttagatcatctgtaaattttggaaggtctgaattggccaaacttttactagcaatggtagagtctcttcttccaagttt 839  Q
    ||||||| |||||||||||||| ||||| |||||||||   |||||||| | ||||||||||||||| || ||  | |||||||||||||||||||||||    
T  28587083 taaaatgagatataagagttgtaagatcgtctgtaaataacggaaggtcggtattggccaaacttttgcttgctgttgtagagtctcttcttccaagttt 28587182  T
Q  840 taccgtccatgatggaccacc 860  Q
    ||| |||||||| || |||||    
T  28587183 tactgtccatgacgggccacc 28587203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 527 - 625
Target Start/End: Complemental strand, 28587411 - 28587313
Alignment:
Q  527 aattaatttacagggttgtgatgcatcaattttgctagacgacacctccacaattgagagtgaaaagagtgcacttccaaatcttaactctgtaagagg 625  Q
    ||||||||| |||||||||||||||||||||||| | || || |  |||||||| ||||| ||||||||||||| ||||||| ||||||| ||||||||    
T  28587411 aattaatttgcagggttgtgatgcatcaattttgttggatgatagttccacaatcgagagcgaaaagagtgcacgtccaaatgttaactcagtaagagg 28587313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 937 - 1003
Target Start/End: Complemental strand, 32493818 - 32493752
Alignment:
Q  937 aacttacaacaaatgatgcatcacgtgctgctattgctacaatgtcagcacaagacacaactccagg 1003  Q
    |||||||| |||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||    
T  32493818 aacttacagcaaatgatgcatcacgagctgctactgctacgatgtcagcacaagacacaactccagg 32493752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 32493130 - 32493206
Alignment:
Q  22 atatgtatgcattctataaattcttgagaactcacatcctcttctccatcaaccaat---atcatttcttcaacatt 95  Q
    ||||||||||||||||||||||  |||||||||| | ||||||||||||||||||||   ||||| |||||||||||    
T  32493130 atatgtatgcattctataaattgatgagaactcataccctcttctccatcaaccaatatcatcatctcttcaacatt 32493206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 28593046 - 28592984
Alignment:
Q  28 atgcattctataaattcttgagaactcacatcctcttctccatcaaccaatatcatttcttca 90  Q
    |||||| |||||||||  |||||||||  | ||||||||||||||||||||||||| ||||||    
T  28593046 atgcatgctataaattgatgagaactcgtaccctcttctccatcaaccaatatcatctcttca 28592984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 937 - 1006
Target Start/End: Original strand, 28592386 - 28592455
Alignment:
Q  937 aacttacaacaaatgatgcatcacgtgctgctattgctacaatgtcagcacaagacacaactccaggaca 1006  Q
    |||||||| |||||||||||||||||||||| |  ||||  ||||| || |||||||||||||| |||||    
T  28592386 aacttacagcaaatgatgcatcacgtgctgccacagctagtatgtccgcgcaagacacaactccgggaca 28592455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 537 - 625
Target Start/End: Complemental strand, 28592587 - 28592499
Alignment:
Q  537 cagggttgtgatgcatcaattttgctagacgacacctccacaattgagagtgaaaagagtgcacttccaaatcttaactctgtaagagg 625  Q
    ||||| |||||||||||||||||| | || ||||   | ||||| ||||| ||||||| ||||||||| ||| ||||||| ||||||||    
T  28592587 cagggatgtgatgcatcaattttgttggatgacagtcctacaatcgagagcgaaaagaatgcacttcctaatattaactcagtaagagg 28592499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 28587808 - 28587775
Alignment:
Q  50 aactcacatcctcttctccatcaaccaatatcat 83  Q
    |||||||| |||||||||||||||||||||||||    
T  28587808 aactcacaccctcttctccatcaaccaatatcat 28587775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University