View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11675_high_10 (Length: 274)

Name: NF11675_high_10
Description: NF11675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11675_high_10
NF11675_high_10
[»] chr3 (7 HSPs)
chr3 (1-134)||(15777359-15777491)
chr3 (43-121)||(49969012-49969091)
chr3 (50-121)||(9733690-9733763)
chr3 (151-208)||(16216373-16216430)
chr3 (1-50)||(3593099-3593148)
chr3 (159-208)||(20905986-20906035)
chr3 (158-190)||(13921167-13921199)
[»] chr4 (5 HSPs)
chr4 (3-117)||(23974078-23974196)
chr4 (47-134)||(15239974-15240062)
chr4 (45-108)||(46224395-46224458)
chr4 (1-128)||(11153758-11153889)
chr4 (25-134)||(13884302-13884413)
[»] scaffold0009 (1 HSPs)
scaffold0009 (43-119)||(160380-160457)
[»] chr7 (4 HSPs)
chr7 (35-134)||(11508763-11508863)
chr7 (55-121)||(3387273-3387340)
chr7 (35-128)||(18147656-18147753)
chr7 (1-67)||(32945355-32945423)
[»] chr6 (4 HSPs)
chr6 (1-128)||(19769047-19769179)
chr6 (47-121)||(3851171-3851245)
chr6 (43-105)||(19400930-19400993)
chr6 (151-199)||(26278853-26278901)
[»] chr5 (4 HSPs)
chr5 (1-128)||(39176386-39176518)
chr5 (151-190)||(28710634-28710673)
chr5 (48-109)||(24068061-24068123)
chr5 (151-189)||(24186501-24186539)
[»] chr1 (3 HSPs)
chr1 (32-108)||(91082-91160)
chr1 (1-128)||(12786177-12786313)
chr1 (71-119)||(41136799-41136847)
[»] chr2 (4 HSPs)
chr2 (43-177)||(34491398-34491530)
chr2 (151-190)||(6880726-6880765)
chr2 (151-190)||(6875210-6875249)
chr2 (1-59)||(32623619-32623677)
[»] scaffold0461 (1 HSPs)
scaffold0461 (48-121)||(12303-12377)
[»] scaffold0281 (1 HSPs)
scaffold0281 (1-51)||(1870-1920)
[»] chr8 (3 HSPs)
chr8 (18-109)||(9883599-9883692)
chr8 (67-107)||(9883280-9883320)
chr8 (34-64)||(40391386-40391416)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-51)||(182968-183019)
[»] scaffold0120 (1 HSPs)
scaffold0120 (48-109)||(29143-29205)


Alignment Details
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 15777359 - 15777491
Alignment:
Q  1 agagatttcaccgtaacaaatcatcaattatgcaaactagaggtaagggggagttttattcatcat-aggattgtgtactcatgtggctagtgaagggtt 99  Q
    |||||||||||||||  || | |||| || |||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| ||||||| ||||    
T  15777359 agagatttcaccgtaggaatttatcacttttgcaaactagaggtaagggggagttttattcatcataagggttgtgtacttatgtgggtagtgaa-ggtt 15777457  T
Q  100 gttaatttttattattttcttaattcttttgatga 134  Q
    ||||||||| | | ||||||| |||| ||||||||    
T  15777458 gttaattttcaatgttttctt-attcctttgatga 15777491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 49969012 - 49969091
Alignment:
Q  43 gtaagggggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttttattattttctta 121  Q
    ||||||||| ||||||||||||||| || |||||||||| ||||| ||||||| ||||||||||||| ||  ||||||||    
T  49969012 gtaagggggggttttattcatcataagggttgtgtactcgtgtgggtagtgaaaggttgttaattttcatcgttttctta 49969091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 9733690 - 9733763
Alignment:
Q  50 ggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaattttta-ttattttctta 121  Q
    ||||||||||||||  || || |||||||||||||||| ||||||||||||||||||||| | |||||||||||    
T  9733690 ggagttttattcattgtaagggttgtgtactcatgtggatagtgaagggttgttaattttcatttattttctta 9733763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 16216430 - 16216373
Alignment:
Q  151 tgttgctgtaattatatgtttgattttcgtttctgaattgcgatattttcaagttaaa 208  Q
    |||| |||||||||||||||||||||||||||| |||||| ||| |||||| ||||||    
T  16216430 tgttactgtaattatatgtttgattttcgtttcagaattgtgatgttttcatgttaaa 16216373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 3593148 - 3593099
Alignment:
Q  1 agagatttcaccgtaacaaatcatcaattatgcaaactagaggtaagggg 50  Q
    ||||||||| |||||  ||||||||||||  |||||||||||||||||||    
T  3593148 agagatttctccgtaggaaatcatcaattcggcaaactagaggtaagggg 3593099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 20906035 - 20905986
Alignment:
Q  159 taattatatgtttgattttcgtttctgaattgcgatattttcaagttaaa 208  Q
    |||||||||||||||||| ||||| ||||||| ||| |||||| ||||||    
T  20906035 taattatatgtttgatttccgtttttgaattgtgatgttttcaggttaaa 20905986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 13921199 - 13921167
Alignment:
Q  158 gtaattatatgtttgattttcgtttctgaattg 190  Q
    |||||||||||||||||||| ||||||||||||    
T  13921199 gtaattatatgtttgatttttgtttctgaattg 13921167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 23974196 - 23974078
Alignment:
Q  3 agatttcaccgtaacaaatcatcaattatgcaaactagaggtaa--gggggag-ttttattcatcat-aggattgtgtactcatgtggctagtgaagggt 98  Q
    |||||||||||||  |||||||||||| ||||||||||||||||  ||||||| ||||||||||||| |||  |||||| |||||||| |||||||||||    
T  23974196 agatttcaccgtaggaaatcatcaattctgcaaactagaggtaatggggggagtttttattcatcataagggctgtgtattcatgtggatagtgaagggt 23974097  T
Q  99 tgttaatttttattatttt 117  Q
    ||||||||||  |||||||    
T  23974096 tgttaattttctttatttt 23974078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 15239974 - 15240062
Alignment:
Q  47 gggggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttttattattttcttaattcttttgatga 134  Q
    ||||||||||||||||||||| || |||||| ||||||||  |||||||||||||||||||| | || |||||||||||||||||||||    
T  15239974 gggggagttttattcatcataagggttgtgtgctcatgtgtgtagtgaagggttgttaatttctgttgttttcttaattcttttgatga 15240062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 46224395 - 46224458
Alignment:
Q  45 aagggggagttttattcatcataggattgtgtactcatgtggctagtgaagggttgttaatttt 108  Q
    ||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||    
T  46224395 aagggggagttttattcattataggtttgtttactcatgtgggtagtgaagggttgttaatttt 46224458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 11153889 - 11153758
Alignment:
Q  1 agagatttcaccgtaacaaatcatcaa-ttatgcaaactagaggtaa-gggggagttt-tattcatcata-ggattgtgtactcatgtggctagtgaagg 96  Q
    |||||||||||||||  || ||||||| || | | |||||||||||| |||||||| | ||||||||||| || |||||||||||||||| |||||||      
T  11153889 agagatttcaccgtatgaattcatcaaattcttcgaactagaggtaatgggggagtctctattcatcataagggttgtgtactcatgtgggtagtgaaaa 11153790  T
Q  97 gttgttaatttttattattttcttaattcttt 128  Q
     ||||||||||||||| |||||||||| ||||    
T  11153789 attgttaatttttattgttttcttaatccttt 11153758  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 13884302 - 13884413
Alignment:
Q  25 caattatgcaaactagaggtaagggggagtttt--attcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttttattattttctta 121  Q
    ||||| ||| |||||||| ||||||||| || |  |||||||||| |||||||||| | |||||| |||||||| || ||||||||| |||||||||||     
T  13884302 caattttgcgaactagagataagggggaattctctattcatcataaggattgtgtatttatgtggatagtgaagagtcgttaattttcattattttctt- 13884400  T
Q  122 attcttttgatga 134  Q
    |||| ||||||||    
T  13884401 attcctttgatga 13884413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 160457 - 160380
Alignment:
Q  43 gtaagggggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttttattattttct 119  Q
    ||||||||||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||||| ||| ||||||    
T  160457 gtaagggggagttttattcatcataagggttgtttactcatgtgggtagtgaagggttgttaattttcattgttttct 160380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 134
Target Start/End: Original strand, 11508763 - 11508863
Alignment:
Q  35 aactagaggtaaggggg-agttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttttattattttcttaattcttttgat 132  Q
    ||||||||||||||||| ||||||||||||  || || ||||||| |||||||| ||||||||||||||||||||| ||||||||||| |||| ||||||    
T  11508763 aactagaggtaaggggggagttttattcattgtaagggttgtgtaatcatgtggatagtgaagggttgttaattttcattattttctt-attcctttgat 11508861  T
Q  133 ga 134  Q
    ||    
T  11508862 ga 11508863  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 3387340 - 3387273
Alignment:
Q  55 tttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttttattattttctta 121  Q
    ||||||||||||| || |||||||||||||||| ||||||||||||||||| ||| ||||||| ||||    
T  3387340 tttattcatcataagggttgtgtactcatgtgggtagtgaagggttgttaaatttgattatttcctta 3387273  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 18147656 - 18147753
Alignment:
Q  35 aactagaggtaa--gggggagttt-tattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttttattattttcttaattcttt 128  Q
    ||||||||||||  |||||||| | ||||||||||| || |||||||||||||||| |||||||   ||||||||||||||| |||||||||| ||||    
T  18147656 aactagaggtaatggggggagtctctattcatcataagggttgtgtactcatgtgggtagtgaaaaattgttaatttttattgttttcttaatccttt 18147753  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 32945423 - 32945355
Alignment:
Q  1 agagatttcaccgtaacaaatcatcaattatgcaaa-ctagaggtaag-ggggagttttattcatcata 67  Q
    |||||||||| ||||  ||||||||||||  ||||| ||||||||||| |||||||| |||||||||||    
T  32945423 agagatttcaacgtaggaaatcatcaatttcgcaaaactagaggtaaggggggagttatattcatcata 32945355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 19769047 - 19769179
Alignment:
Q  1 agagatttcaccgtaacaaatcatcaa-ttatgcaaactagaggtaa--gggggagttt-tattcatcata-ggattgtgtactcatgtggctagtgaag 95  Q
    |||||||||||||||  || ||||||| || | | ||||||||||||  |||||||| | ||||||||||| || |||||||||||||||| |||||||     
T  19769047 agagatttcaccgtaggaattcatcaaattcttcgaactagaggtaatggggggagtctctattcatcataagggttgtgtactcatgtgggtagtgaaa 19769146  T
Q  96 ggttgttaatttttattattttcttaattcttt 128  Q
    | |||||||||||||||||||||||||| ||||    
T  19769147 gattgttaatttttattattttcttaatccttt 19769179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 3851171 - 3851245
Alignment:
Q  47 gggggagttttattcatcataggattgtgtactcatgtggctagtgaagggttgttaatttttattattttctta 121  Q
    |||| |||||||||||||||| | |||||||||||||||| ||||||| ||||||||| ||| ||||||| ||||    
T  3851171 ggggaagttttattcatcataaggttgtgtactcatgtgggtagtgaaaggttgttaaatttcattatttcctta 3851245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 19400993 - 19400930
Alignment:
Q  43 gtaagggggagttttattcatcat-aggattgtgtactcatgtggctagtgaagggttgttaat 105  Q
    ||||||||| |||||||||||||| ||| |||||||||| ||||| ||||||| ||||||||||    
T  19400993 gtaagggggtgttttattcatcataagggttgtgtactcgtgtgggtagtgaaaggttgttaat 19400930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 26278901 - 26278853
Alignment:
Q  151 tgttgctgtaattatatgtttgattttcgtttctgaattgcgatatttt 199  Q
    ||||||||||||||||||||||||||| |||| ||||||| ||| ||||    
T  26278901 tgttgctgtaattatatgtttgatttttgtttttgaattgtgatgtttt 26278853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 39176518 - 39176386
Alignment:
Q  1 agagatttcaccgtaacaaatcatcaattatgcaaa-ctagaggtaaggggg--agttt-tattcatcata-ggattgtgtactcatgtggctagtgaag 95  Q
    |||||||||||| ||  ||||||||||||  ||||| |||||||||| ||||  ||| | ||||||||||| || |||||||||||||||| |||||||     
T  39176518 agagatttcaccatagaaaatcatcaatttcgcaaaactagaggtaatgggggaagtctctattcatcataagggttgtgtactcatgtgggtagtgaaa 39176419  T
Q  96 ggttgttaatttttattattttcttaattcttt 128  Q
    | ||||||||||||||| |||||||||| ||||    
T  39176418 gattgttaatttttattgttttcttaatccttt 39176386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 28710634 - 28710673
Alignment:
Q  151 tgttgctgtaattatatgtttgattttcgtttctgaattg 190  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  28710634 tgttgttgtaattatatgtttgattttcgtttctgaattg 28710673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 24068123 - 24068061
Alignment:
Q  48 ggggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaattttt 109  Q
    ||||||||| |||||||||| || |||||||| | ||||| ||||||||||||||||||||||    
T  24068123 ggggagtttcattcatcataagggttgtgtacgcgtgtgggtagtgaagggttgttaattttt 24068061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 24186539 - 24186501
Alignment:
Q  151 tgttgctgtaattatatgtttgattttcgtttctgaatt 189  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  24186539 tgttgccgtaattatatgtttgattttcgtttctgaatt 24186501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 91160 - 91082
Alignment:
Q  32 gcaaactagaggtaaggg-ggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttt 108  Q
    |||||||||||||||||| ||||||||||||||| || ||  | ||||||||||||| |||||||||||||||||||||    
T  91160 gcaaactagaggtaagggaggagttttattcatcgtaagggatatgtactcatgtgggtagtgaagggttgttaatttt 91082  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 12786313 - 12786177
Alignment:
Q  1 agagatttcaccgtaacaaatcatcaa-ttatgcaaactagaggtaa--gggggagttt-tattcatcata-ggattgtgtactcatgtggct----agt 91  Q
    |||||||||||||||  || ||||||| || | ||||||||||||||  |||||||| | ||||||||||| || |||||||||||||||| |    |||    
T  12786313 agagatttcaccgtaggaattcatcaaattctccaaactagaggtaatggggggagtctctattcatcataagggttgtgtactcatgtgggtgggtagt 12786214  T
Q  92 gaagggttgttaatttttattattttcttaattcttt 128  Q
    ||| | ||||||||||||||| |||||||||| ||||    
T  12786213 gaaagattgttaatttttattgttttcttaatccttt 12786177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 41136799 - 41136847
Alignment:
Q  71 ttgtgtactcatgtggctagtgaagggttgttaatttttattattttct 119  Q
    |||| ||||||||||| ||||||| ||||||||||||| ||| ||||||    
T  41136799 ttgtatactcatgtgggtagtgaatggttgttaattttcattgttttct 41136847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 177
Target Start/End: Original strand, 34491398 - 34491530
Alignment:
Q  43 gtaagggggagttttattcatcatagga-ttgtgtactcatgtggctagtgaagggttgttaatttttattattttcttaattcttttgatgagtatgtg 141  Q
    ||||||| ||||||||||||||||| || ||  |||||||||||| | ||||||| |||||||||||| || ||||||| |||| |||||| | | | ||    
T  34491398 gtaagggagagttttattcatcataagagttacgtactcatgtgggttgtgaaggattgttaatttttgttgttttctt-attcctttgataattttatg 34491496  T
Q  142 tttaattcgtgttgctgtaattatatgtttgatttt 177  Q
    || |||||   ||||| |||||||||||||||||||    
T  34491497 ttaaattc--attgctataattatatgtttgatttt 34491530  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 6880726 - 6880765
Alignment:
Q  151 tgttgctgtaattatatgtttgattttcgtttctgaattg 190  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  6880726 tgttgccgtaattatatgtttgattttcgtttctgaattg 6880765  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 6875210 - 6875249
Alignment:
Q  151 tgttgctgtaattatatgtttgattttcgtttctgaattg 190  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  6875210 tgttgccgcaattatatgtttgattttcgtttctgaattg 6875249  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 32623619 - 32623677
Alignment:
Q  1 agagatttcaccgtaacaaatcatcaattatgc-aaactagaggtaagggggagttttat 59  Q
    |||||||||||||||  |||||||||||| ||| ||||||||||| ||||||||||||||    
T  32623619 agagatttcaccgtagaaaatcatcaattttgcaaaactagaggt-agggggagttttat 32623677  T

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Target: scaffold0461 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 12377 - 12303
Alignment:
Q  48 ggggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttttattattttctta 121  Q
    ||||||||||||||||| || ||  | ||||||||||||| |||||||||||||||||||||  |||||||||||    
T  12377 ggggagttttattcatcgtaagggatatgtactcatgtgggtagtgaagggttgttaattttggttattttctta 12303  T

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Target: scaffold0281 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1920 - 1870
Alignment:
Q  1 agagatttcaccgtaacaaatcatcaattatgcaaactagaggtaaggggg 51  Q
    |||||||||||||||  |||||||||||| ||||||||||||||| |||||    
T  1920 agagatttcaccgtaggaaatcatcaattctgcaaactagaggtatggggg 1870  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 9883692 - 9883599
Alignment:
Q  18 aaatcatcaattatgcaaactagaggtaagggggagttt-tattcatcat-aggattgtgtactcatgtggctagtgaagggttgttaattttt 109  Q
    |||||||||||| | ||||||||||||| |||||||||| |||| | ||| ||| ||||||| |||||||| | | ||||| ||||||||||||    
T  9883692 aaatcatcaattctacaaactagaggtatgggggagtttctatttaccataagggttgtgtaatcatgtggatggcgaaggattgttaattttt 9883599  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 9883320 - 9883280
Alignment:
Q  67 aggattgtgtactcatgtggctagtgaagggttgttaattt 107  Q
    |||||||||||||||||||| |||| |||||||||||||||    
T  9883320 aggattgtgtactcatgtgggtagttaagggttgttaattt 9883280  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 64
Target Start/End: Complemental strand, 40391416 - 40391386
Alignment:
Q  34 aaactagaggtaagggggagttttattcatc 64  Q
    |||||||||||||||||||||||||||||||    
T  40391416 aaactagaggtaagggggagttttattcatc 40391386  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 183019 - 182968
Alignment:
Q  1 agagatttcaccgtaacaaatcatcaa-ttatgcaaactagaggtaaggggg 51  Q
    |||||||||||||||  |||||||||| || |||||||||||||||||||||    
T  183019 agagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggggg 182968  T

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Target: scaffold0120 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 29205 - 29143
Alignment:
Q  48 ggggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaattttt 109  Q
    ||||||||||||||| | || || ||||||| |||||||| |||||||||||| |||||||||    
T  29205 ggggagttttattcagcgtaagggttgtgtaatcatgtgggtagtgaagggtttttaattttt 29143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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