View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11675_low_11 (Length: 269)
Name: NF11675_low_11
Description: NF11675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11675_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 13009301 - 13009534
Alignment:
| Q |
17 |
agggagaggaagaattgttgcggacttttgaaggagattcaagagattgagaagtgtgctagggggatgaatgaattggctgattctttggaatttcctt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13009301 |
agggagaggaagaattgttgcggacttttgaaggagattcaggagattgagaagtgtgctagggggatgaatgaattggctgattctttggaatttcctt |
13009400 |
T |
|
| Q |
117 |
tgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaaggtttgtgaaggtttgaaagatggattggatcctttggaaagacaagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13009401 |
tgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaatgtttgtgaaggtttgaaagatggattggatcctttggaaagacaagt |
13009500 |
T |
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| Q |
217 |
tagagaagtgtttcatagaattgttcgtggtaga |
250 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
13009501 |
tagagaagtatttcatagaattgttcgtggtaga |
13009534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 12976902 - 12977135
Alignment:
| Q |
17 |
agggagaggaagaattgttgcggacttttgaaggagattcaagagattgagaagtgtgctagggggatgaatgaattggctgattctttggaatttcctt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12976902 |
agggagaggaagaattgttgcggacttttgaaggagattcaggagattgagaagtgtgctagggggatgaatgaattggctgattctttggaatttcctt |
12977001 |
T |
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| Q |
117 |
tgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaaggtttgtgaaggtttgaaagatggattggatcctttggaaagacaagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |||||| |
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| T |
12977002 |
tgagtgaagagaaagaagaggaagttagggttaaagttgaagatgtggtgattgtttgtgaaagttttaaagatggattggatcctttggaaatacaagt |
12977101 |
T |
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| Q |
217 |
tagagaagtgtttcatagaattgttcgtggtaga |
250 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
12977102 |
cagagaagtgtttcatagaattgttcatggtaga |
12977135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 13031659 - 13031892
Alignment:
| Q |
17 |
agggagaggaagaattgttgcggacttttgaaggagattcaagagattgagaagtgtgctagggggatgaatgaattggctgattctttggaatttcctt |
116 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
13031659 |
agggagatgaagagttgttgcggacttttgaaggagattctggagattgagaagtgtgctagggggatgaatgaactggctgattctttgcggtttcctt |
13031758 |
T |
|
| Q |
117 |
tgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaaggtttgtgaaggtttgaaagatggattggatcctttggaaagacaagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13031759 |
tgagtgaagagaaagaagaggaagttagggttaaagttgaagatgtggtgaaggtttgtgaaggtttgaaagatggattggatcctttggaaagacaagt |
13031858 |
T |
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| Q |
217 |
tagagaagtgtttcatagaattgttcgtggtaga |
250 |
Q |
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||||||||||||||||||||||||| |||||||| |
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| T |
13031859 |
tagagaagtgtttcatagaattgtttgtggtaga |
13031892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 13012859 - 13013092
Alignment:
| Q |
17 |
agggagaggaagaattgttgcggacttttgaaggagattcaagagattgagaagtgtgctagggggatgaatgaattggctgattctttggaatttcctt |
116 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13012859 |
agggagatgaagagttgttgcggacttttgagggagattcaggagattgagaagtgtgctagggggatgaatgaattggctgattctgtggaatttcctt |
13012958 |
T |
|
| Q |
117 |
tgagtgaagagaaagaagaggaagttagggttaatgttgaagatgtggtgaaggtttgtgaaggtttgaaagatggattggatcctttggaaagacaagt |
216 |
Q |
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||||||||||||||||||||||| |||||||||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||||| | || |||||| |
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| T |
13012959 |
tgagtgaagagaaagaagaggaacttagggttaaagttgcagatgtggtgattgtttgtgaaagtttgaaagatggattggatcctttcgtaatacaagt |
13013058 |
T |
|
| Q |
217 |
tagagaagtgtttcatagaattgttcgtggtaga |
250 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
13013059 |
cagagaagtgtttcatagaattgttcgtggtaga |
13013092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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