View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11675_low_12 (Length: 264)
Name: NF11675_low_12
Description: NF11675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11675_low_12 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 14104174 - 14103944
Alignment:
| Q |
15 |
ggaatcttttgtatcaatggttctgagggctcatcgagtgttcaatcaatctagcttactcactactcctcatgatgaaagtgggctggaggcaatggtt |
114 |
Q |
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| T |
14104174 |
ggaatcttttgtatcaatggttctgagggctcatcgagtgttcaatcaatctagcttactcactactcctcatgatgaaagtgggctggaggcaat---t |
14104078 |
T |
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| Q |
115 |
gttggaaagatgcattactacaaagatggaaaagaaaattggtactatgatgataggaataaaccaacaagttcatggttttatgatcatgttactattc |
214 |
Q |
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| T |
14104077 |
gttggaaagatgcattactacaaagatggaaaagaaaattggtactatgatgataggaataaaccaacaagttcatggttttatgatcatgttactattc |
14103978 |
T |
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| Q |
215 |
ctgaaggaaccgatccataagtggttgaagtcat |
248 |
Q |
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| T |
14103977 |
ctgaaggagccgatccataagtggttgaaatcat |
14103944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 27235482 - 27235583
Alignment:
| Q |
73 |
ctcactactcctcatgatgaaagtgggctggaggcaatggttgttggaaagatgcattactacaaagatggaaaagaaaattggtactatgatgatagga |
172 |
Q |
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| T |
27235482 |
ctcactactcctcatgatgagagtggattggatgctaaagttgctgggaaaaagcactactacaaagatggaagaaacaattggtactatgatgatagga |
27235581 |
T |
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| Q |
173 |
at |
174 |
Q |
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|| |
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| T |
27235582 |
at |
27235583 |
T |
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Back To:
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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 223726 - 223798
Alignment:
| Q |
73 |
ctcactactcctcatgatgaaagtgggctggaggcaatggttgttggaaagatgcattactacaaagatggaa |
145 |
Q |
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| T |
223726 |
ctcactactcctcatgataaaagtggattggatgctagggttgttggcaaaatgcactattacagagatggaa |
223798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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