View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11675_low_13 (Length: 238)
Name: NF11675_low_13
Description: NF11675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11675_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 394435 - 394656
Alignment:
| Q |
1 |
ttcttcatgaacaatcatgggttctagagaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgcgaatgaagtttcttgatgttggtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
394435 |
ttcttcatgaacaatcatgggttctagagaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgtgaatgaagtttcttgatgttggtt |
394534 |
T |
|
| Q |
101 |
tctatttttaacttttgtgggattgaaactttctgaatttgaagacnnnnnnnaatttgggaatttctaaatttggatcacattatgtattgttgaatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
394535 |
tctatttttaacttttgtgggattgaaactttctgaatttgaagactttttttaatttgggaatttctaaatttggatcacattatgtatttttgactgt |
394634 |
T |
|
| Q |
201 |
gtctgaaattggtctcttgaat |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
394635 |
gtctgaaattggtctcttgaat |
394656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 19764985 - 19765209
Alignment:
| Q |
1 |
ttcttcatgaacaatcatgggttctagagaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgcgaatgaagtttcttgatgttggtt |
100 |
Q |
| |
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|||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| |
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| T |
19764985 |
ttcttcataaacaatcataggttctagaaaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgtgaatgaagtttcttgat-tttgtt |
19765083 |
T |
|
| Q |
101 |
tctatttttaacttttgtgggattgaaactttctgaatttgaagacnnnnnnnaatttgggaatttctaaatttg-----gatcacattatgtattgttg |
195 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| | ||||||||||||||||||| |
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| T |
19765084 |
tctattttt-tcttttgtggaattgaaactttctgaatttgaagactttttttaatttgggattttctaaattggatcataatcacattatgtattgttg |
19765182 |
T |
|
| Q |
196 |
aatgtgtctgaaattggtctcttgaat |
222 |
Q |
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| ||||||||||||||||||||||||| |
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| T |
19765183 |
attgtgtctgaaattggtctcttgaat |
19765209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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